Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1807

Experiment: MoYLS4 with G418 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1806 and DvMF_1807 are separated by 483 nucleotidesDvMF_1807 and DvMF_1808 are separated by 93 nucleotides DvMF_1806: DvMF_1806 - transcriptional regulator, MucR family (RefSeq), at 2,206,890 to 2,207,291 _1806 DvMF_1807: DvMF_1807 - protein of unknown function DUF6 transmembrane (RefSeq), at 2,207,775 to 2,208,737 _1807 DvMF_1808: DvMF_1808 - protein of unknown function DUF1078 domain protein (RefSeq), at 2,208,831 to 2,210,336 _1808 Position (kb) 2207 2208 2209Strain fitness (log2 ratio) -1 0 1at 2207.447 kb on + strandat 2208.042 kb on + strand, within DvMF_1807at 2208.049 kb on - strand, within DvMF_1807at 2208.087 kb on - strand, within DvMF_1807at 2208.435 kb on - strand, within DvMF_1807at 2208.944 kb on - strandat 2208.962 kb on + strandat 2209.095 kb on + strand, within DvMF_1808at 2209.203 kb on + strand, within DvMF_1808at 2209.290 kb on - strand, within DvMF_1808at 2209.344 kb on - strand, within DvMF_1808at 2209.546 kb on + strand, within DvMF_1808at 2209.694 kb on - strand, within DvMF_1808at 2209.723 kb on + strand, within DvMF_1808

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with G418 0.125 mg/ml
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2,207,447 + -0.4
2,208,042 + DvMF_1807 0.28 -0.2
2,208,049 - DvMF_1807 0.28 -1.2
2,208,087 - DvMF_1807 0.32 -0.4
2,208,435 - DvMF_1807 0.69 -1.3
2,208,944 - +0.2
2,208,962 + +0.5
2,209,095 + DvMF_1808 0.18 -0.4
2,209,203 + DvMF_1808 0.25 -0.0
2,209,290 - DvMF_1808 0.30 +0.2
2,209,344 - DvMF_1808 0.34 +0.2
2,209,546 + DvMF_1808 0.47 -0.2
2,209,694 - DvMF_1808 0.57 +0.3
2,209,723 + DvMF_1808 0.59 +0.3

Or see this region's nucleotide sequence