Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1803

Experiment: MoYLS4 with G418 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1802 and DvMF_1803 are separated by 164 nucleotidesDvMF_1803 and DvMF_1804 are separated by 67 nucleotides DvMF_1802: DvMF_1802 - protein of unknown function DUF6 transmembrane (RefSeq), at 2,202,908 to 2,204,005 _1802 DvMF_1803: DvMF_1803 - alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen (RefSeq), at 2,204,170 to 2,204,874 _1803 DvMF_1804: DvMF_1804 - alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen (RefSeq), at 2,204,942 to 2,205,847 _1804 Position (kb) 2204 2205Strain fitness (log2 ratio) -1 0 1at 2203.289 kb on - strand, within DvMF_1802at 2203.448 kb on + strand, within DvMF_1802at 2203.509 kb on + strand, within DvMF_1802at 2203.746 kb on - strand, within DvMF_1802at 2203.779 kb on + strand, within DvMF_1802at 2203.881 kb on - strand, within DvMF_1802at 2203.996 kb on - strandat 2204.074 kb on - strandat 2204.076 kb on + strandat 2204.103 kb on + strandat 2204.111 kb on - strandat 2204.173 kb on - strandat 2204.542 kb on - strand, within DvMF_1803at 2204.599 kb on + strand, within DvMF_1803at 2204.604 kb on - strand, within DvMF_1803at 2204.782 kb on + strand, within DvMF_1803at 2204.945 kb on + strandat 2204.976 kb on - strandat 2205.011 kb on + strandat 2205.061 kb on - strand, within DvMF_1804at 2205.103 kb on + strand, within DvMF_1804at 2205.166 kb on - strand, within DvMF_1804at 2205.248 kb on + strand, within DvMF_1804at 2205.258 kb on + strand, within DvMF_1804at 2205.515 kb on + strand, within DvMF_1804at 2205.568 kb on + strand, within DvMF_1804at 2205.571 kb on - strand, within DvMF_1804

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with G418 0.125 mg/ml
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2,203,289 - DvMF_1802 0.35 +0.1
2,203,448 + DvMF_1802 0.49 -0.4
2,203,509 + DvMF_1802 0.55 +0.4
2,203,746 - DvMF_1802 0.76 +0.1
2,203,779 + DvMF_1802 0.79 -0.8
2,203,881 - DvMF_1802 0.89 -0.9
2,203,996 - -0.6
2,204,074 - -0.3
2,204,076 + -0.3
2,204,103 + -0.1
2,204,111 - +1.0
2,204,173 - -0.7
2,204,542 - DvMF_1803 0.53 +0.4
2,204,599 + DvMF_1803 0.61 +0.1
2,204,604 - DvMF_1803 0.62 -0.5
2,204,782 + DvMF_1803 0.87 +0.6
2,204,945 + -0.2
2,204,976 - +0.0
2,205,011 + -0.3
2,205,061 - DvMF_1804 0.13 +0.3
2,205,103 + DvMF_1804 0.18 -0.8
2,205,166 - DvMF_1804 0.25 -0.4
2,205,248 + DvMF_1804 0.34 -0.0
2,205,258 + DvMF_1804 0.35 -0.3
2,205,515 + DvMF_1804 0.63 -0.4
2,205,568 + DvMF_1804 0.69 -0.9
2,205,571 - DvMF_1804 0.69 -0.2

Or see this region's nucleotide sequence