Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1736

Experiment: MoYLS4 with G418 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1735 and DvMF_1736 are separated by 253 nucleotidesDvMF_1736 and DvMF_1737 are separated by 239 nucleotides DvMF_1735: DvMF_1735 - protein of unknown function UPF0153 (RefSeq), at 2,120,778 to 2,121,752 _1735 DvMF_1736: DvMF_1736 - serine/threonine protein kinase (RefSeq), at 2,122,006 to 2,123,967 _1736 DvMF_1737: DvMF_1737 - metallophosphoesterase (RefSeq), at 2,124,207 to 2,124,935 _1737 Position (kb) 2122 2123 2124Strain fitness (log2 ratio) -2 -1 0 1at 2121.370 kb on - strand, within DvMF_1735at 2121.587 kb on + strand, within DvMF_1735at 2121.624 kb on + strand, within DvMF_1735at 2121.650 kb on + strand, within DvMF_1735at 2121.804 kb on + strandat 2121.812 kb on - strandat 2122.130 kb on + strandat 2122.148 kb on - strandat 2122.207 kb on + strand, within DvMF_1736at 2122.303 kb on + strand, within DvMF_1736at 2122.344 kb on - strand, within DvMF_1736at 2122.640 kb on + strand, within DvMF_1736at 2122.705 kb on - strand, within DvMF_1736at 2122.767 kb on - strand, within DvMF_1736at 2123.118 kb on + strand, within DvMF_1736at 2123.175 kb on + strand, within DvMF_1736at 2123.175 kb on + strand, within DvMF_1736at 2123.183 kb on - strand, within DvMF_1736at 2123.183 kb on - strand, within DvMF_1736at 2123.343 kb on - strand, within DvMF_1736at 2123.437 kb on + strand, within DvMF_1736at 2123.651 kb on + strand, within DvMF_1736at 2123.839 kb on - strandat 2124.081 kb on + strandat 2124.089 kb on - strandat 2124.201 kb on - strandat 2124.213 kb on - strandat 2124.470 kb on + strand, within DvMF_1737at 2124.501 kb on + strand, within DvMF_1737at 2124.568 kb on - strand, within DvMF_1737at 2124.797 kb on - strand, within DvMF_1737

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with G418 0.125 mg/ml
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2,121,370 - DvMF_1735 0.61 +0.0
2,121,587 + DvMF_1735 0.83 -0.3
2,121,624 + DvMF_1735 0.87 -0.3
2,121,650 + DvMF_1735 0.89 -0.2
2,121,804 + -0.3
2,121,812 - -0.1
2,122,130 + -0.3
2,122,148 - -0.2
2,122,207 + DvMF_1736 0.10 -1.7
2,122,303 + DvMF_1736 0.15 -0.1
2,122,344 - DvMF_1736 0.17 -0.2
2,122,640 + DvMF_1736 0.32 -0.4
2,122,705 - DvMF_1736 0.36 -0.3
2,122,767 - DvMF_1736 0.39 -0.4
2,123,118 + DvMF_1736 0.57 -0.5
2,123,175 + DvMF_1736 0.60 -0.2
2,123,175 + DvMF_1736 0.60 -0.4
2,123,183 - DvMF_1736 0.60 -0.3
2,123,183 - DvMF_1736 0.60 +0.1
2,123,343 - DvMF_1736 0.68 -0.3
2,123,437 + DvMF_1736 0.73 -0.2
2,123,651 + DvMF_1736 0.84 -0.5
2,123,839 - -0.2
2,124,081 + +0.1
2,124,089 - -0.2
2,124,201 - -0.1
2,124,213 - -0.1
2,124,470 + DvMF_1737 0.36 -0.5
2,124,501 + DvMF_1737 0.40 -0.3
2,124,568 - DvMF_1737 0.50 -1.9
2,124,797 - DvMF_1737 0.81 -0.5

Or see this region's nucleotide sequence