Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1735

Experiment: MoYLS4 with G418 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1734 and DvMF_1735 are separated by 124 nucleotidesDvMF_1735 and DvMF_1736 are separated by 253 nucleotides DvMF_1734: DvMF_1734 - ADP-L-glycero-D-manno-heptose-6-epimerase (RefSeq), at 2,119,670 to 2,120,653 _1734 DvMF_1735: DvMF_1735 - protein of unknown function UPF0153 (RefSeq), at 2,120,778 to 2,121,752 _1735 DvMF_1736: DvMF_1736 - serine/threonine protein kinase (RefSeq), at 2,122,006 to 2,123,967 _1736 Position (kb) 2120 2121 2122Strain fitness (log2 ratio) -2 -1 0 1at 2120.726 kb on + strandat 2120.924 kb on + strand, within DvMF_1735at 2120.964 kb on - strand, within DvMF_1735at 2121.370 kb on - strand, within DvMF_1735at 2121.587 kb on + strand, within DvMF_1735at 2121.624 kb on + strand, within DvMF_1735at 2121.650 kb on + strand, within DvMF_1735at 2121.804 kb on + strandat 2121.812 kb on - strandat 2122.130 kb on + strandat 2122.148 kb on - strandat 2122.207 kb on + strand, within DvMF_1736at 2122.303 kb on + strand, within DvMF_1736at 2122.344 kb on - strand, within DvMF_1736at 2122.640 kb on + strand, within DvMF_1736at 2122.705 kb on - strand, within DvMF_1736

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with G418 0.125 mg/ml
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2,120,726 + -2.2
2,120,924 + DvMF_1735 0.15 -0.5
2,120,964 - DvMF_1735 0.19 -0.2
2,121,370 - DvMF_1735 0.61 +0.0
2,121,587 + DvMF_1735 0.83 -0.3
2,121,624 + DvMF_1735 0.87 -0.3
2,121,650 + DvMF_1735 0.89 -0.2
2,121,804 + -0.3
2,121,812 - -0.1
2,122,130 + -0.3
2,122,148 - -0.2
2,122,207 + DvMF_1736 0.10 -1.7
2,122,303 + DvMF_1736 0.15 -0.1
2,122,344 - DvMF_1736 0.17 -0.2
2,122,640 + DvMF_1736 0.32 -0.4
2,122,705 - DvMF_1736 0.36 -0.3

Or see this region's nucleotide sequence