Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1497

Experiment: MoYLS4 with G418 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1496 and DvMF_1497 overlap by 1 nucleotidesDvMF_1497 and DvMF_1498 overlap by 4 nucleotides DvMF_1496: DvMF_1496 - anaerobic cobalt chelatase (RefSeq), at 1,846,656 to 1,847,657 _1496 DvMF_1497: DvMF_1497 - transport system permease protein (RefSeq), at 1,847,657 to 1,848,820 _1497 DvMF_1498: DvMF_1498 - ABC transporter related (RefSeq), at 1,848,817 to 1,849,830 _1498 Position (kb) 1847 1848 1849Strain fitness (log2 ratio) -3 -2 -1 0 1at 1846.933 kb on - strand, within DvMF_1496at 1847.048 kb on + strand, within DvMF_1496at 1847.073 kb on + strand, within DvMF_1496at 1847.249 kb on - strand, within DvMF_1496at 1847.275 kb on - strand, within DvMF_1496at 1847.298 kb on + strand, within DvMF_1496at 1847.365 kb on - strand, within DvMF_1496at 1847.579 kb on - strandat 1847.651 kb on - strandat 1847.657 kb on + strandat 1847.695 kb on + strandat 1847.703 kb on - strandat 1847.703 kb on - strandat 1847.755 kb on + strandat 1847.926 kb on - strand, within DvMF_1497at 1848.068 kb on + strand, within DvMF_1497at 1848.252 kb on + strand, within DvMF_1497at 1848.348 kb on + strand, within DvMF_1497at 1848.493 kb on - strand, within DvMF_1497at 1848.875 kb on + strandat 1849.294 kb on - strand, within DvMF_1498at 1849.346 kb on + strand, within DvMF_1498at 1849.346 kb on + strand, within DvMF_1498at 1849.420 kb on + strand, within DvMF_1498at 1849.425 kb on + strand, within DvMF_1498at 1849.438 kb on - strand, within DvMF_1498at 1849.507 kb on - strand, within DvMF_1498at 1849.509 kb on + strand, within DvMF_1498at 1849.542 kb on + strand, within DvMF_1498at 1849.564 kb on + strand, within DvMF_1498at 1849.740 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with G418 0.125 mg/ml
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1,846,933 - DvMF_1496 0.28 -1.6
1,847,048 + DvMF_1496 0.39 -1.7
1,847,073 + DvMF_1496 0.42 -0.8
1,847,249 - DvMF_1496 0.59 -2.8
1,847,275 - DvMF_1496 0.62 -0.5
1,847,298 + DvMF_1496 0.64 -1.9
1,847,365 - DvMF_1496 0.71 -1.2
1,847,579 - -1.3
1,847,651 - -0.2
1,847,657 + -0.3
1,847,695 + -0.7
1,847,703 - -0.5
1,847,703 - -0.2
1,847,755 + -1.5
1,847,926 - DvMF_1497 0.23 -2.0
1,848,068 + DvMF_1497 0.35 -1.4
1,848,252 + DvMF_1497 0.51 +1.2
1,848,348 + DvMF_1497 0.59 -1.2
1,848,493 - DvMF_1497 0.72 -2.1
1,848,875 + -1.2
1,849,294 - DvMF_1498 0.47 -1.6
1,849,346 + DvMF_1498 0.52 -1.6
1,849,346 + DvMF_1498 0.52 -1.2
1,849,420 + DvMF_1498 0.59 -0.4
1,849,425 + DvMF_1498 0.60 -0.5
1,849,438 - DvMF_1498 0.61 -0.8
1,849,507 - DvMF_1498 0.68 -0.3
1,849,509 + DvMF_1498 0.68 -1.3
1,849,542 + DvMF_1498 0.71 -0.5
1,849,564 + DvMF_1498 0.74 -0.8
1,849,740 + -0.1

Or see this region's nucleotide sequence