Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1496

Experiment: MoYLS4 with G418 0.125 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_1495 and DvMF_1496 are separated by 978 nucleotidesDvMF_1496 and DvMF_1497 overlap by 1 nucleotides DvMF_1495: DvMF_1495 - von Willebrand factor type A (RefSeq), at 1,838,241 to 1,845,677 _1495 DvMF_1496: DvMF_1496 - anaerobic cobalt chelatase (RefSeq), at 1,846,656 to 1,847,657 _1496 DvMF_1497: DvMF_1497 - transport system permease protein (RefSeq), at 1,847,657 to 1,848,820 _1497 Position (kb) 1846 1847 1848Strain fitness (log2 ratio) -3 -2 -1 0 1at 1845.673 kb on + strandat 1845.714 kb on + strandat 1845.727 kb on - strandat 1846.458 kb on - strandat 1846.933 kb on - strand, within DvMF_1496at 1847.048 kb on + strand, within DvMF_1496at 1847.073 kb on + strand, within DvMF_1496at 1847.249 kb on - strand, within DvMF_1496at 1847.275 kb on - strand, within DvMF_1496at 1847.298 kb on + strand, within DvMF_1496at 1847.365 kb on - strand, within DvMF_1496at 1847.579 kb on - strandat 1847.651 kb on - strandat 1847.657 kb on + strandat 1847.695 kb on + strandat 1847.703 kb on - strandat 1847.703 kb on - strandat 1847.755 kb on + strandat 1847.926 kb on - strand, within DvMF_1497at 1848.068 kb on + strand, within DvMF_1497at 1848.252 kb on + strand, within DvMF_1497at 1848.348 kb on + strand, within DvMF_1497at 1848.493 kb on - strand, within DvMF_1497

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with G418 0.125 mg/ml
remove
1,845,673 + +0.3
1,845,714 + +0.9
1,845,727 - -0.4
1,846,458 - -0.6
1,846,933 - DvMF_1496 0.28 -1.6
1,847,048 + DvMF_1496 0.39 -1.7
1,847,073 + DvMF_1496 0.42 -0.8
1,847,249 - DvMF_1496 0.59 -2.8
1,847,275 - DvMF_1496 0.62 -0.5
1,847,298 + DvMF_1496 0.64 -1.9
1,847,365 - DvMF_1496 0.71 -1.2
1,847,579 - -1.3
1,847,651 - -0.2
1,847,657 + -0.3
1,847,695 + -0.7
1,847,703 - -0.5
1,847,703 - -0.2
1,847,755 + -1.5
1,847,926 - DvMF_1497 0.23 -2.0
1,848,068 + DvMF_1497 0.35 -1.4
1,848,252 + DvMF_1497 0.51 +1.2
1,848,348 + DvMF_1497 0.59 -1.2
1,848,493 - DvMF_1497 0.72 -2.1

Or see this region's nucleotide sequence