Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1391

Experiment: MoYLS4 with G418 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1390 and DvMF_1391 are separated by 405 nucleotidesDvMF_1391 and DvMF_1392 overlap by 4 nucleotidesDvMF_1392 and DvMF_1393 are separated by 200 nucleotides DvMF_1390: DvMF_1390 - redox-sensing transcriptional repressor Rex (RefSeq), at 1,697,385 to 1,698,032 _1390 DvMF_1391: DvMF_1391 - protein of unknown function DUF62 (RefSeq), at 1,698,438 to 1,699,325 _1391 DvMF_1392: DvMF_1392 - cobalamin-5-phosphate synthase CobS (RefSeq), at 1,699,322 to 1,700,077 _1392 DvMF_1393: DvMF_1393 - flagellar export protein FliJ (RefSeq), at 1,700,278 to 1,700,718 _1393 Position (kb) 1698 1699 1700Strain fitness (log2 ratio) -2 -1 0 1at 1698.108 kb on + strandat 1698.233 kb on - strandat 1698.337 kb on - strandat 1698.435 kb on + strandat 1698.524 kb on + strandat 1698.532 kb on + strand, within DvMF_1391at 1698.593 kb on + strand, within DvMF_1391at 1698.725 kb on - strand, within DvMF_1391at 1698.726 kb on + strand, within DvMF_1391at 1698.815 kb on - strand, within DvMF_1391at 1698.876 kb on - strand, within DvMF_1391at 1698.876 kb on - strand, within DvMF_1391at 1699.285 kb on - strandat 1699.359 kb on + strandat 1700.085 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with G418 0.125 mg/ml
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1,698,108 + -0.1
1,698,233 - +0.1
1,698,337 - -0.4
1,698,435 + -0.1
1,698,524 + -0.1
1,698,532 + DvMF_1391 0.11 -0.2
1,698,593 + DvMF_1391 0.17 -0.4
1,698,725 - DvMF_1391 0.32 -1.1
1,698,726 + DvMF_1391 0.32 -0.8
1,698,815 - DvMF_1391 0.42 -1.8
1,698,876 - DvMF_1391 0.49 -0.6
1,698,876 - DvMF_1391 0.49 -0.0
1,699,285 - -0.4
1,699,359 + -2.3
1,700,085 - +0.1

Or see this region's nucleotide sequence