Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0833

Experiment: MoYLS4 with G418 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0831 and DvMF_0832 are separated by 151 nucleotidesDvMF_0832 and DvMF_0833 are separated by 278 nucleotidesDvMF_0833 and DvMF_0834 overlap by 1 nucleotidesDvMF_0834 and DvMF_0835 are separated by 133 nucleotides DvMF_0831: DvMF_0831 - protein of unknown function DUF21 (RefSeq), at 1,003,800 to 1,005,158 _0831 DvMF_0832: DvMF_0832 - hypothetical protein (RefSeq), at 1,005,310 to 1,005,576 _0832 DvMF_0833: DvMF_0833 - cobalamin biosynthesis protein CbiB (RefSeq), at 1,005,855 to 1,006,979 _0833 DvMF_0834: DvMF_0834 - tRNA/rRNA methyltransferase (SpoU) (RefSeq), at 1,006,979 to 1,007,437 _0834 DvMF_0835: DvMF_0835 - Beta-N-acetylhexosaminidase (RefSeq), at 1,007,571 to 1,009,331 _0835 Position (kb) 1005 1006 1007Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1005.042 kb on - strandat 1005.238 kb on + strandat 1005.246 kb on - strandat 1005.436 kb on + strand, within DvMF_0832at 1005.705 kb on + strandat 1005.723 kb on - strandat 1005.795 kb on + strandat 1005.838 kb on - strandat 1006.609 kb on + strand, within DvMF_0833at 1006.635 kb on + strand, within DvMF_0833at 1007.047 kb on + strand, within DvMF_0834at 1007.047 kb on + strand, within DvMF_0834at 1007.047 kb on + strand, within DvMF_0834at 1007.055 kb on - strand, within DvMF_0834at 1007.055 kb on - strand, within DvMF_0834at 1007.055 kb on - strand, within DvMF_0834at 1007.055 kb on - strand, within DvMF_0834at 1007.055 kb on - strand, within DvMF_0834at 1007.118 kb on - strand, within DvMF_0834at 1007.951 kb on - strand, within DvMF_0835

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with G418 0.125 mg/ml
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1,005,042 - -0.5
1,005,238 + -0.3
1,005,246 - -0.0
1,005,436 + DvMF_0832 0.47 -0.3
1,005,705 + -0.5
1,005,723 - -0.1
1,005,795 + -0.8
1,005,838 - +0.0
1,006,609 + DvMF_0833 0.67 -1.0
1,006,635 + DvMF_0833 0.69 -4.3
1,007,047 + DvMF_0834 0.15 -2.0
1,007,047 + DvMF_0834 0.15 -3.3
1,007,047 + DvMF_0834 0.15 -1.3
1,007,055 - DvMF_0834 0.17 -2.1
1,007,055 - DvMF_0834 0.17 -1.8
1,007,055 - DvMF_0834 0.17 -2.0
1,007,055 - DvMF_0834 0.17 -1.6
1,007,055 - DvMF_0834 0.17 -1.6
1,007,118 - DvMF_0834 0.30 -1.0
1,007,951 - DvMF_0835 0.22 +0.1

Or see this region's nucleotide sequence