Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0411

Experiment: MoYLS4 with G418 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0410 and DvMF_0411 are separated by 202 nucleotidesDvMF_0411 and DvMF_0412 are separated by 217 nucleotides DvMF_0410: DvMF_0410 - Mrp protein (RefSeq), at 479,356 to 480,252 _0410 DvMF_0411: DvMF_0411 - SNARE associated Golgi protein (RefSeq), at 480,455 to 481,042 _0411 DvMF_0412: DvMF_0412 - protein-L-isoaspartate O-methyltransferase (RefSeq), at 481,260 to 481,907 _0412 Position (kb) 480 481 482Strain fitness (log2 ratio) -1 0 1at 480.598 kb on + strand, within DvMF_0411at 480.606 kb on - strand, within DvMF_0411at 480.668 kb on + strand, within DvMF_0411at 480.804 kb on + strand, within DvMF_0411at 481.039 kb on - strandat 481.055 kb on + strandat 481.299 kb on + strandat 481.591 kb on + strand, within DvMF_0412at 481.731 kb on - strand, within DvMF_0412at 481.736 kb on - strand, within DvMF_0412at 481.742 kb on - strand, within DvMF_0412at 481.762 kb on + strand, within DvMF_0412

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with G418 0.125 mg/ml
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480,598 + DvMF_0411 0.24 +0.2
480,606 - DvMF_0411 0.26 -0.4
480,668 + DvMF_0411 0.36 +0.6
480,804 + DvMF_0411 0.59 -0.2
481,039 - +0.1
481,055 + +0.2
481,299 + -1.2
481,591 + DvMF_0412 0.51 -0.5
481,731 - DvMF_0412 0.73 -0.3
481,736 - DvMF_0412 0.73 -0.3
481,742 - DvMF_0412 0.74 -0.3
481,762 + DvMF_0412 0.77 +0.0

Or see this region's nucleotide sequence