Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1747

Experiment: L-Malic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1745 and Shewana3_1746 are separated by 29 nucleotidesShewana3_1746 and mnmA are separated by 3 nucleotidesmnmA and Shewana3_1748 are separated by 221 nucleotidesShewana3_1748 and Shewana3_1749 are separated by 73 nucleotides Shewana3_1745: Shewana3_1745 - adenylosuccinate lyase (RefSeq), at 2,058,797 to 2,060,167 _1745 Shewana3_1746: Shewana3_1746 - hypothetical protein (RefSeq), at 2,060,197 to 2,060,814 _1746 Shewana3_1747: mnmA - tRNA-specific 2-thiouridylase MnmA (RefSeq), at 2,060,818 to 2,061,936 mnmA Shewana3_1748: Shewana3_1748 - NUDIX hydrolase (RefSeq), at 2,062,158 to 2,062,649 _1748 Shewana3_1749: Shewana3_1749 - ribosomal large subunit pseudouridine synthase E (RefSeq), at 2,062,723 to 2,063,532 _1749 Position (kb) 2060 2061 2062Strain fitness (log2 ratio) -2 -1 0 1at 2060.625 kb on - strand, within Shewana3_1746at 2060.642 kb on - strand, within Shewana3_1746at 2060.647 kb on - strand, within Shewana3_1746at 2061.995 kb on - strandat 2062.212 kb on - strand, within Shewana3_1748at 2062.240 kb on + strand, within Shewana3_1748at 2062.348 kb on + strand, within Shewana3_1748at 2062.348 kb on + strand, within Shewana3_1748at 2062.496 kb on - strand, within Shewana3_1748at 2062.598 kb on + strand, within Shewana3_1748at 2062.678 kb on + strandat 2062.793 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic (C)
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2,060,625 - Shewana3_1746 0.69 -0.1
2,060,642 - Shewana3_1746 0.72 -2.2
2,060,647 - Shewana3_1746 0.73 -0.6
2,061,995 - +1.3
2,062,212 - Shewana3_1748 0.11 -0.5
2,062,240 + Shewana3_1748 0.17 +0.8
2,062,348 + Shewana3_1748 0.39 +1.1
2,062,348 + Shewana3_1748 0.39 +0.3
2,062,496 - Shewana3_1748 0.69 +0.5
2,062,598 + Shewana3_1748 0.89 +0.7
2,062,678 + +0.7
2,062,793 + +0.1

Or see this region's nucleotide sequence