Experiment: L-Malic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1625 and Shewana3_1626 are separated by 227 nucleotides Shewana3_1626 and Shewana3_1627 are separated by 18 nucleotides Shewana3_1627 and Shewana3_1628 are separated by 151 nucleotides Shewana3_1628 and Shewana3_1629 are separated by 160 nucleotides
Shewana3_1625: Shewana3_1625 - S-adenosylmethionine decarboxylase (RefSeq), at 1,914,094 to 1,915,029
_1625
Shewana3_1626: Shewana3_1626 - pyridoxamine 5'-phosphate oxidase (RefSeq), at 1,915,257 to 1,915,895
_1626
Shewana3_1627: Shewana3_1627 - hypothetical protein (RefSeq), at 1,915,914 to 1,916,366
_1627
Shewana3_1628: Shewana3_1628 - YceI family protein (RefSeq), at 1,916,518 to 1,917,093
_1628
Shewana3_1629: Shewana3_1629 - hypothetical protein (RefSeq), at 1,917,254 to 1,917,610
_1629
Position (kb)
1915
1916
1917 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1914.922 kb on - strand, within Shewana3_1625 at 1914.939 kb on + strand at 1914.982 kb on - strand at 1914.982 kb on - strand at 1915.904 kb on + strand at 1915.920 kb on - strand at 1915.922 kb on + strand at 1916.732 kb on + strand, within Shewana3_1628 at 1916.745 kb on + strand, within Shewana3_1628 at 1916.850 kb on + strand, within Shewana3_1628 at 1916.850 kb on + strand, within Shewana3_1628 at 1916.858 kb on - strand, within Shewana3_1628 at 1917.061 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic (C) remove 1,914,922 - Shewana3_1625 0.88 -1.5 1,914,939 + +0.7 1,914,982 - +2.0 1,914,982 - -0.1 1,915,904 + -0.5 1,915,920 - +0.5 1,915,922 + +0.3 1,916,732 + Shewana3_1628 0.37 +0.4 1,916,745 + Shewana3_1628 0.39 +0.3 1,916,850 + Shewana3_1628 0.58 -1.9 1,916,850 + Shewana3_1628 0.58 +0.0 1,916,858 - Shewana3_1628 0.59 -1.1 1,917,061 + -0.3
Or see this region's nucleotide sequence