Experiment: L-Malic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0845 and Shewana3_0846 are separated by 192 nucleotides Shewana3_0846 and Shewana3_0847 are separated by 621 nucleotides
Shewana3_0845: Shewana3_0845 - anaerobic nitric oxide reductase transcription regulator (RefSeq), at 978,827 to 980,383
_0845
Shewana3_0846: Shewana3_0846 - putative nitric oxide reductase (subunit B) transmembrane protein (RefSeq), at 980,576 to 982,861
_0846
Shewana3_0847: Shewana3_0847 - potassium/proton antiporter (RefSeq), at 983,483 to 985,207
_0847
Position (kb) 980
981
982
983 Strain fitness (log2 ratio) -2
-1
0
1 at 979.649 kb on + strand, within Shewana3_0845 at 979.649 kb on + strand, within Shewana3_0845 at 979.657 kb on - strand, within Shewana3_0845 at 979.907 kb on + strand, within Shewana3_0845 at 979.915 kb on - strand, within Shewana3_0845 at 979.938 kb on - strand, within Shewana3_0845 at 979.938 kb on - strand, within Shewana3_0845 at 979.938 kb on - strand, within Shewana3_0845 at 979.938 kb on - strand, within Shewana3_0845 at 979.985 kb on - strand, within Shewana3_0845 at 980.004 kb on + strand, within Shewana3_0845 at 980.199 kb on + strand, within Shewana3_0845 at 980.227 kb on + strand, within Shewana3_0845 at 980.242 kb on + strand at 980.273 kb on + strand at 980.454 kb on + strand at 980.476 kb on + strand at 980.512 kb on + strand at 980.535 kb on + strand at 980.626 kb on + strand at 980.660 kb on + strand at 980.660 kb on + strand at 980.699 kb on - strand at 980.751 kb on - strand at 980.819 kb on + strand, within Shewana3_0846 at 980.885 kb on + strand, within Shewana3_0846 at 980.931 kb on + strand, within Shewana3_0846 at 980.931 kb on - strand, within Shewana3_0846 at 980.946 kb on + strand, within Shewana3_0846 at 980.990 kb on + strand, within Shewana3_0846 at 980.990 kb on + strand, within Shewana3_0846 at 981.261 kb on - strand, within Shewana3_0846 at 981.292 kb on - strand, within Shewana3_0846 at 981.389 kb on + strand, within Shewana3_0846 at 981.404 kb on + strand, within Shewana3_0846 at 981.404 kb on - strand, within Shewana3_0846 at 981.456 kb on + strand, within Shewana3_0846 at 981.474 kb on + strand, within Shewana3_0846 at 981.691 kb on + strand, within Shewana3_0846 at 981.715 kb on + strand, within Shewana3_0846 at 981.719 kb on + strand, within Shewana3_0846 at 981.719 kb on + strand, within Shewana3_0846 at 981.822 kb on + strand, within Shewana3_0846 at 981.885 kb on - strand, within Shewana3_0846 at 982.068 kb on + strand, within Shewana3_0846 at 982.076 kb on - strand, within Shewana3_0846 at 982.076 kb on - strand, within Shewana3_0846 at 982.088 kb on - strand, within Shewana3_0846 at 982.224 kb on + strand, within Shewana3_0846 at 982.266 kb on + strand, within Shewana3_0846 at 982.289 kb on - strand, within Shewana3_0846 at 982.357 kb on + strand, within Shewana3_0846 at 982.357 kb on + strand, within Shewana3_0846 at 982.393 kb on + strand, within Shewana3_0846 at 982.422 kb on + strand, within Shewana3_0846 at 982.444 kb on - strand, within Shewana3_0846 at 982.478 kb on - strand, within Shewana3_0846 at 982.648 kb on - strand at 982.900 kb on - strand at 983.058 kb on - strand at 983.330 kb on + strand at 983.653 kb on + strand at 983.772 kb on + strand, within Shewana3_0847
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic (C) remove 979,649 + Shewana3_0845 0.53 +1.1 979,649 + Shewana3_0845 0.53 +0.2 979,657 - Shewana3_0845 0.53 -1.4 979,907 + Shewana3_0845 0.69 -0.3 979,915 - Shewana3_0845 0.70 -0.2 979,938 - Shewana3_0845 0.71 -1.8 979,938 - Shewana3_0845 0.71 +0.3 979,938 - Shewana3_0845 0.71 +0.2 979,938 - Shewana3_0845 0.71 -1.5 979,985 - Shewana3_0845 0.74 +0.3 980,004 + Shewana3_0845 0.76 -0.9 980,199 + Shewana3_0845 0.88 -1.1 980,227 + Shewana3_0845 0.90 -1.7 980,242 + -1.4 980,273 + +0.3 980,454 + -0.6 980,476 + -0.3 980,512 + +0.3 980,535 + +0.2 980,626 + +0.5 980,660 + +0.5 980,660 + -1.5 980,699 - +1.2 980,751 - +0.1 980,819 + Shewana3_0846 0.11 +0.2 980,885 + Shewana3_0846 0.14 +0.1 980,931 + Shewana3_0846 0.16 +0.2 980,931 - Shewana3_0846 0.16 +0.4 980,946 + Shewana3_0846 0.16 +1.1 980,990 + Shewana3_0846 0.18 +0.5 980,990 + Shewana3_0846 0.18 +0.1 981,261 - Shewana3_0846 0.30 -0.1 981,292 - Shewana3_0846 0.31 -0.5 981,389 + Shewana3_0846 0.36 +0.7 981,404 + Shewana3_0846 0.36 +0.5 981,404 - Shewana3_0846 0.36 +0.3 981,456 + Shewana3_0846 0.38 +0.1 981,474 + Shewana3_0846 0.39 +0.1 981,691 + Shewana3_0846 0.49 +0.7 981,715 + Shewana3_0846 0.50 +0.5 981,719 + Shewana3_0846 0.50 +1.6 981,719 + Shewana3_0846 0.50 +1.0 981,822 + Shewana3_0846 0.55 -1.0 981,885 - Shewana3_0846 0.57 +0.3 982,068 + Shewana3_0846 0.65 -0.4 982,076 - Shewana3_0846 0.66 -0.2 982,076 - Shewana3_0846 0.66 -0.1 982,088 - Shewana3_0846 0.66 -1.5 982,224 + Shewana3_0846 0.72 +0.0 982,266 + Shewana3_0846 0.74 +0.5 982,289 - Shewana3_0846 0.75 +0.5 982,357 + Shewana3_0846 0.78 -1.5 982,357 + Shewana3_0846 0.78 +0.0 982,393 + Shewana3_0846 0.79 +0.2 982,422 + Shewana3_0846 0.81 -2.1 982,444 - Shewana3_0846 0.82 +0.9 982,478 - Shewana3_0846 0.83 +0.6 982,648 - +0.9 982,900 - +0.4 983,058 - -1.1 983,330 + -1.7 983,653 + -1.2 983,772 + Shewana3_0847 0.17 -0.7
Or see this region's nucleotide sequence