Experiment: L-Malic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0631 and Shewana3_0632 are separated by 317 nucleotides Shewana3_0632 and Shewana3_0633 are separated by 291 nucleotides
Shewana3_0631: Shewana3_0631 - hypothetical protein (RefSeq), at 741,265 to 741,966
_0631
Shewana3_0632: Shewana3_0632 - methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor (RefSeq), at 742,284 to 743,582
_0632
Shewana3_0633: Shewana3_0633 - molydopterin dinucleotide-binding region (RefSeq), at 743,874 to 746,981
_0633
Position (kb) 742
743
744 Strain fitness (log2 ratio) -2
-1
0
1 at 741.425 kb on + strand, within Shewana3_0631 at 741.425 kb on + strand, within Shewana3_0631 at 741.425 kb on + strand, within Shewana3_0631 at 741.433 kb on - strand, within Shewana3_0631 at 741.448 kb on - strand, within Shewana3_0631 at 741.701 kb on - strand, within Shewana3_0631 at 741.763 kb on + strand, within Shewana3_0631 at 741.848 kb on - strand, within Shewana3_0631 at 741.994 kb on + strand at 742.023 kb on - strand at 742.089 kb on - strand at 742.137 kb on - strand at 742.163 kb on + strand at 742.163 kb on + strand at 742.171 kb on - strand at 742.436 kb on - strand, within Shewana3_0632 at 742.518 kb on - strand, within Shewana3_0632 at 742.826 kb on + strand, within Shewana3_0632 at 742.893 kb on - strand, within Shewana3_0632 at 743.143 kb on + strand, within Shewana3_0632 at 743.151 kb on - strand, within Shewana3_0632 at 743.255 kb on + strand, within Shewana3_0632 at 743.257 kb on - strand, within Shewana3_0632 at 743.430 kb on - strand, within Shewana3_0632 at 743.484 kb on - strand at 743.636 kb on + strand at 743.678 kb on + strand at 743.678 kb on + strand at 743.678 kb on + strand at 743.678 kb on + strand at 743.984 kb on + strand at 744.071 kb on + strand at 744.071 kb on + strand at 744.219 kb on + strand, within Shewana3_0633 at 744.260 kb on - strand, within Shewana3_0633 at 744.267 kb on + strand, within Shewana3_0633 at 744.336 kb on + strand, within Shewana3_0633 at 744.344 kb on - strand, within Shewana3_0633 at 744.344 kb on - strand, within Shewana3_0633 at 744.344 kb on - strand, within Shewana3_0633 at 744.567 kb on - strand, within Shewana3_0633
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic (C) remove 741,425 + Shewana3_0631 0.23 -1.9 741,425 + Shewana3_0631 0.23 -0.9 741,425 + Shewana3_0631 0.23 -1.5 741,433 - Shewana3_0631 0.24 +0.0 741,448 - Shewana3_0631 0.26 -1.0 741,701 - Shewana3_0631 0.62 -0.2 741,763 + Shewana3_0631 0.71 +0.2 741,848 - Shewana3_0631 0.83 +0.4 741,994 + -1.4 742,023 - +0.4 742,089 - -1.1 742,137 - -1.2 742,163 + +0.7 742,163 + +0.6 742,171 - +0.5 742,436 - Shewana3_0632 0.12 -1.8 742,518 - Shewana3_0632 0.18 +0.6 742,826 + Shewana3_0632 0.42 +0.1 742,893 - Shewana3_0632 0.47 +0.1 743,143 + Shewana3_0632 0.66 -1.1 743,151 - Shewana3_0632 0.67 -0.8 743,255 + Shewana3_0632 0.75 -1.1 743,257 - Shewana3_0632 0.75 -0.8 743,430 - Shewana3_0632 0.88 +0.3 743,484 - -1.0 743,636 + -0.8 743,678 + +0.6 743,678 + -1.2 743,678 + +0.5 743,678 + +1.3 743,984 + -1.7 744,071 + +0.4 744,071 + -1.2 744,219 + Shewana3_0633 0.11 +0.4 744,260 - Shewana3_0633 0.12 +1.1 744,267 + Shewana3_0633 0.13 +0.4 744,336 + Shewana3_0633 0.15 -0.8 744,344 - Shewana3_0633 0.15 -1.2 744,344 - Shewana3_0633 0.15 +0.2 744,344 - Shewana3_0633 0.15 +0.1 744,567 - Shewana3_0633 0.22 -0.7
Or see this region's nucleotide sequence