Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0435

Experiment: L-Malic (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShewana3_0434 and hemE are separated by 447 nucleotideshemE and Shewana3_0436 are separated by 377 nucleotides Shewana3_0434: Shewana3_0434 - anti-RNA polymerase sigma 70 factor (RefSeq), at 504,759 to 505,256 _0434 Shewana3_0435: hemE - uroporphyrinogen decarboxylase (RefSeq), at 505,704 to 506,768 hemE Shewana3_0436: Shewana3_0436 - diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) (RefSeq), at 507,146 to 509,716 _0436 Position (kb) 505 506 507Strain fitness (log2 ratio) -2 -1 0 1 2at 504.740 kb on + strandat 504.740 kb on + strandat 505.160 kb on - strand, within Shewana3_0434at 505.283 kb on - strandat 505.429 kb on - strandat 506.857 kb on - strandat 507.099 kb on - strandat 507.101 kb on + strandat 507.101 kb on + strandat 507.109 kb on - strandat 507.141 kb on - strandat 507.243 kb on + strandat 507.301 kb on + strandat 507.495 kb on + strand, within Shewana3_0436at 507.631 kb on - strand, within Shewana3_0436at 507.644 kb on + strand, within Shewana3_0436

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic (C)
remove
504,740 + +0.0
504,740 + +0.8
505,160 - Shewana3_0434 0.81 -1.6
505,283 - -0.3
505,429 - +0.9
506,857 - +0.1
507,099 - -1.8
507,101 + +0.6
507,101 + +1.9
507,109 - +1.0
507,141 - -0.1
507,243 + +0.4
507,301 + -1.3
507,495 + Shewana3_0436 0.14 +0.4
507,631 - Shewana3_0436 0.19 +0.1
507,644 + Shewana3_0436 0.19 +0.1

Or see this region's nucleotide sequence