Experiment: L-Malic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0325 and Shewana3_0326 are separated by 10 nucleotides Shewana3_0326 and fabG are separated by 0 nucleotides fabG and Shewana3_0328 are separated by 125 nucleotides
Shewana3_0325: Shewana3_0325 - hypothetical protein (RefSeq), at 359,707 to 360,450
_0325
Shewana3_0326: Shewana3_0326 - 3-oxoacyl-(acyl carrier protein) synthase II (RefSeq), at 360,461 to 361,714
_0326
Shewana3_0327: fabG - 3-ketoacyl-(acyl-carrier-protein) reductase (RefSeq), at 361,715 to 362,440
fabG
Shewana3_0328: Shewana3_0328 - thioester dehydrase family protein (RefSeq), at 362,566 to 363,105
_0328
Position (kb) 360
361
362 Strain fitness (log2 ratio) -2
-1
0
1 at 359.489 kb on + strand at 359.497 kb on - strand at 359.532 kb on - strand at 359.550 kb on + strand at 359.556 kb on + strand at 359.571 kb on + strand at 359.579 kb on - strand at 359.579 kb on - strand at 359.579 kb on - strand at 359.611 kb on - strand at 359.616 kb on - strand at 359.618 kb on + strand at 359.633 kb on - strand at 359.633 kb on - strand at 359.638 kb on + strand at 359.705 kb on + strand at 359.713 kb on - strand at 359.829 kb on - strand, within Shewana3_0325 at 359.866 kb on + strand, within Shewana3_0325 at 360.181 kb on + strand, within Shewana3_0325 at 360.218 kb on - strand, within Shewana3_0325 at 360.248 kb on - strand, within Shewana3_0325 at 360.312 kb on - strand, within Shewana3_0325 at 360.312 kb on - strand, within Shewana3_0325 at 360.375 kb on - strand, within Shewana3_0325 at 360.406 kb on - strand at 360.411 kb on + strand at 360.651 kb on - strand, within Shewana3_0326 at 360.686 kb on + strand, within Shewana3_0326 at 360.709 kb on - strand, within Shewana3_0326 at 360.763 kb on - strand, within Shewana3_0326 at 360.969 kb on - strand, within Shewana3_0326 at 361.180 kb on - strand, within Shewana3_0326 at 361.268 kb on + strand, within Shewana3_0326 at 361.286 kb on + strand, within Shewana3_0326 at 361.302 kb on - strand, within Shewana3_0326 at 361.362 kb on - strand, within Shewana3_0326 at 361.404 kb on - strand, within Shewana3_0326 at 361.612 kb on + strand at 361.612 kb on + strand at 361.612 kb on + strand at 361.612 kb on + strand at 361.620 kb on - strand at 361.620 kb on - strand at 361.620 kb on - strand at 361.620 kb on - strand at 361.654 kb on - strand at 361.691 kb on + strand at 361.699 kb on - strand at 361.838 kb on - strand, within fabG at 361.845 kb on + strand, within fabG at 361.845 kb on + strand, within fabG at 361.853 kb on - strand, within fabG at 361.930 kb on + strand, within fabG at 361.930 kb on + strand, within fabG at 361.930 kb on + strand, within fabG at 361.930 kb on + strand, within fabG at 361.938 kb on - strand, within fabG at 361.938 kb on - strand, within fabG at 361.938 kb on - strand, within fabG at 361.938 kb on - strand, within fabG at 361.957 kb on + strand, within fabG at 361.968 kb on + strand, within fabG at 361.993 kb on + strand, within fabG at 362.001 kb on - strand, within fabG at 362.001 kb on - strand, within fabG at 362.020 kb on - strand, within fabG at 362.191 kb on - strand, within fabG at 362.260 kb on + strand, within fabG at 362.302 kb on + strand, within fabG at 362.303 kb on - strand, within fabG at 362.310 kb on - strand, within fabG at 362.420 kb on + strand at 362.501 kb on + strand at 362.529 kb on + strand at 362.529 kb on + strand at 362.529 kb on + strand at 362.537 kb on - strand at 362.564 kb on + strand at 362.564 kb on + strand at 362.564 kb on + strand at 362.572 kb on - strand at 362.712 kb on - strand, within Shewana3_0328
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic (C) remove 359,489 + +0.7 359,497 - +0.5 359,532 - -1.0 359,550 + -0.1 359,556 + +0.3 359,571 + -0.1 359,579 - -1.8 359,579 - -1.0 359,579 - +0.2 359,611 - +1.0 359,616 - -1.7 359,618 + +0.8 359,633 - +0.2 359,633 - -0.8 359,638 + -1.1 359,705 + +0.7 359,713 - +0.4 359,829 - Shewana3_0325 0.16 +1.4 359,866 + Shewana3_0325 0.21 +0.3 360,181 + Shewana3_0325 0.64 +0.1 360,218 - Shewana3_0325 0.69 +0.4 360,248 - Shewana3_0325 0.73 +0.7 360,312 - Shewana3_0325 0.81 +0.3 360,312 - Shewana3_0325 0.81 -1.3 360,375 - Shewana3_0325 0.90 +0.4 360,406 - +0.5 360,411 + +0.3 360,651 - Shewana3_0326 0.15 +0.3 360,686 + Shewana3_0326 0.18 +0.7 360,709 - Shewana3_0326 0.20 -1.5 360,763 - Shewana3_0326 0.24 +0.3 360,969 - Shewana3_0326 0.41 +0.6 361,180 - Shewana3_0326 0.57 -0.3 361,268 + Shewana3_0326 0.64 -1.0 361,286 + Shewana3_0326 0.66 +0.6 361,302 - Shewana3_0326 0.67 -0.6 361,362 - Shewana3_0326 0.72 +0.5 361,404 - Shewana3_0326 0.75 +0.6 361,612 + -0.5 361,612 + -1.0 361,612 + -0.8 361,612 + -1.4 361,620 - +0.2 361,620 - -0.2 361,620 - +0.5 361,620 - +0.6 361,654 - +0.2 361,691 + +0.5 361,699 - +1.1 361,838 - fabG Shewana3_0327 0.17 -0.1 361,845 + fabG Shewana3_0327 0.18 +0.4 361,845 + fabG Shewana3_0327 0.18 +0.3 361,853 - fabG Shewana3_0327 0.19 -0.6 361,930 + fabG Shewana3_0327 0.30 -1.2 361,930 + fabG Shewana3_0327 0.30 -0.8 361,930 + fabG Shewana3_0327 0.30 -1.3 361,930 + fabG Shewana3_0327 0.30 -1.5 361,938 - fabG Shewana3_0327 0.31 +0.7 361,938 - fabG Shewana3_0327 0.31 +0.4 361,938 - fabG Shewana3_0327 0.31 -0.6 361,938 - fabG Shewana3_0327 0.31 +0.3 361,957 + fabG Shewana3_0327 0.33 -2.0 361,968 + fabG Shewana3_0327 0.35 +0.2 361,993 + fabG Shewana3_0327 0.38 +0.3 362,001 - fabG Shewana3_0327 0.39 -0.1 362,001 - fabG Shewana3_0327 0.39 -1.2 362,020 - fabG Shewana3_0327 0.42 +0.2 362,191 - fabG Shewana3_0327 0.66 +0.4 362,260 + fabG Shewana3_0327 0.75 +0.3 362,302 + fabG Shewana3_0327 0.81 -0.2 362,303 - fabG Shewana3_0327 0.81 -0.1 362,310 - fabG Shewana3_0327 0.82 -0.3 362,420 + +0.3 362,501 + +0.1 362,529 + +0.4 362,529 + +0.5 362,529 + +0.7 362,537 - -0.7 362,564 + +0.8 362,564 + -1.2 362,564 + +0.5 362,572 - +0.4 362,712 - Shewana3_0328 0.27 +0.3
Or see this region's nucleotide sequence