Strain Fitness in Shewanella amazonensis SB2B around Sama_2074

Experiment: casaminos

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	casaminos
2,511,660	-				-0.3
2,511,682	-				+0.5
2,511,740	+				+0.7
2,511,775	-		Sama_2073	0.13	+0.5
2,511,827	+		Sama_2073	0.19	-0.3
2,511,840	+		Sama_2073	0.21	-0.5
2,511,867	-		Sama_2073	0.24	-0.9
2,511,867	-		Sama_2073	0.24	+0.5
2,511,867	-		Sama_2073	0.24	-0.1
2,511,903	+		Sama_2073	0.28	-0.7
2,511,903	+		Sama_2073	0.28	-0.2
2,511,903	+		Sama_2073	0.28	+2.5
2,511,903	+		Sama_2073	0.28	+0.3
2,511,903	+		Sama_2073	0.28	-0.8
2,511,907	+		Sama_2073	0.29	-0.2
2,511,907	+		Sama_2073	0.29	+0.5
2,511,907	+		Sama_2073	0.29	+0.8
2,511,928	+		Sama_2073	0.31	+1.0
2,511,929	-		Sama_2073	0.31	+0.8
2,512,002	+		Sama_2073	0.40	-0.6
2,512,050	+		Sama_2073	0.46	+0.1
2,512,085	+		Sama_2073	0.51	+0.7
2,512,111	-		Sama_2073	0.54	+1.4
2,512,125	-		Sama_2073	0.56	+0.6
2,512,156	+		Sama_2073	0.59	-0.1
2,512,156	+		Sama_2073	0.59	+1.5
2,512,192	+		Sama_2073	0.64	+0.5
2,512,193	-		Sama_2073	0.64	-0.1
2,512,200	+		Sama_2073	0.65	-0.0
2,512,223	+		Sama_2073	0.68	+1.0
2,512,223	+		Sama_2073	0.68	+0.4
2,512,223	+		Sama_2073	0.68	-0.6
2,512,224	-		Sama_2073	0.68	-0.1
2,512,224	-		Sama_2073	0.68	-2.2
2,512,224	-		Sama_2073	0.68	+2.3
2,512,287	-		Sama_2073	0.76	+0.5
2,512,330	+		Sama_2073	0.81	-1.5
2,512,362	-		Sama_2073	0.85	-0.1
2,512,362	-		Sama_2073	0.85	+0.3
2,512,402	+		Sama_2073	0.90	+0.1
2,512,402	+		Sama_2073	0.90	-1.6
2,512,402	+		Sama_2073	0.90	-0.5
2,512,402	+		Sama_2073	0.90	-0.1
2,512,402	+		Sama_2073	0.90	-0.5
2,512,402	+		Sama_2073	0.90	-2.1
2,512,402	+		Sama_2073	0.90	+0.7
2,512,402	+		Sama_2073	0.90	-0.2
2,512,402	+		Sama_2073	0.90	+0.9
2,512,402	+		Sama_2073	0.90	-0.3
2,512,402	+		Sama_2073	0.90	-0.5
2,512,403	-		Sama_2073	0.90	-1.7
2,512,403	-		Sama_2073	0.90	+1.0
2,512,404	+				+0.9
2,512,404	+				-0.9
2,512,404	+				+0.5
2,512,404	+				-0.2
2,512,404	+				+0.5
2,512,405	-				-0.3
2,512,405	-				-0.8
2,512,405	-				-0.1
2,512,406	+				-0.3
2,512,406	+				+0.0
2,512,406	+				-1.2
2,512,406	+				-1.3
2,512,407	-				-0.3
2,512,464	+				+0.5
2,512,464	+				-1.4
2,512,465	-				-0.2
2,512,483	+				+0.4
2,512,512	+				-1.3
2,512,517	+				+0.6
2,512,518	-				-0.4
2,512,546	+				-1.0
2,512,550	+				-0.3
2,512,580	-				+0.6
2,512,580	-				-0.1
2,512,587	-				-1.9
2,512,587	-				-2.5
2,512,588	+				-1.3
2,512,589	-				+0.8
2,512,589	-				-3.2
2,512,609	+				-1.1
2,512,645	-				-3.4
2,512,658	+				-4.1
2,512,658	+				-2.1
2,512,658	+				-2.3
2,512,659	-				-2.3
2,512,662	+				-2.3
2,512,662	+				-2.7
2,512,662	+				-1.9
2,512,662	+				-1.9
2,512,663	-				-1.9
2,512,663	-				-1.1
2,512,663	-				-2.3
2,512,663	-				-2.9
2,512,663	-				-1.9
2,512,677	+				-0.3
2,512,738	+				-2.0
2,512,738	+				-3.2
2,512,738	+				-1.1
2,512,739	-				-3.9
2,512,821	+		Sama_2074	0.17	-1.1
2,513,034	+		Sama_2074	0.37	-2.5
2,513,035	-		Sama_2074	0.38	-2.1
2,513,103	+		Sama_2074	0.44	-2.9
2,513,258	+		Sama_2074	0.59	-3.5
2,513,258	+		Sama_2074	0.59	-1.9
2,513,258	+		Sama_2074	0.59	-1.9
2,513,258	+		Sama_2074	0.59	-3.2
2,513,258	+		Sama_2074	0.59	-2.3
2,513,258	+		Sama_2074	0.59	-1.9
2,513,258	+		Sama_2074	0.59	-2.7
2,513,258	+		Sama_2074	0.59	-2.3
2,513,258	+		Sama_2074	0.59	-2.2
2,513,259	-		Sama_2074	0.59	-2.1
2,513,259	-		Sama_2074	0.59	-1.1
2,513,263	+		Sama_2074	0.59	-2.7
2,513,263	+		Sama_2074	0.59	-1.9
2,513,286	+		Sama_2074	0.61	-2.8
2,513,286	+		Sama_2074	0.61	-2.6
2,513,287	-		Sama_2074	0.61	-1.9
2,513,287	-		Sama_2074	0.61	-2.5
2,513,287	-		Sama_2074	0.61	-2.4
2,513,287	-		Sama_2074	0.61	-2.7
2,513,318	-		Sama_2074	0.64	-3.0
2,513,356	+		Sama_2074	0.68	-3.9
2,513,560	-		Sama_2074	0.87	-0.8
2,513,695	+				-0.4
2,513,704	+				+1.1
2,513,711	+				-0.1
2,513,711	+				-1.6
2,513,711	+				+1.0
2,513,711	+				-2.3
2,513,712	-				-1.1
2,513,712	-				-1.6
2,513,712	-				-0.1
2,513,712	-				+0.0
2,513,721	-				-0.3
2,513,732	+				-0.5
2,513,756	+				+1.8
2,513,757	-				+0.6
2,513,757	-				+0.3
2,513,757	-				-1.0
2,513,757	-				+0.9
2,513,761	+				-2.7
2,513,768	-				-0.4
2,513,770	+				+0.5
2,513,770	+				+0.6
2,513,797	+				+0.2
2,513,797	+				-1.2
2,513,797	+				+0.1
2,513,798	-				+0.5
2,513,800	+				+0.5
2,513,801	-				+0.4
2,513,801	-				-0.2
2,513,801	-				-0.4
2,513,801	-				+0.3
2,513,801	-				-0.3
2,513,852	-				-0.3
2,513,865	-				+0.4
2,513,865	-				-0.2
2,513,881	+				+0.2
2,513,882	-				+0.9
2,513,883	+				+0.3
2,513,939	+				-0.8
2,514,015	-		Sama_2075	0.18	-0.4
2,514,102	-		Sama_2075	0.38	+0.5
2,514,220	+		Sama_2075	0.66	-0.3
2,514,220	+		Sama_2075	0.66	-1.9
2,514,220	+		Sama_2075	0.66	+0.0
2,514,220	+		Sama_2075	0.66	-0.5
2,514,220	+		Sama_2075	0.66	-0.8
2,514,220	+		Sama_2075	0.66	-0.2
2,514,220	+		Sama_2075	0.66	-0.1
2,514,220	+		Sama_2075	0.66	-0.9
2,514,221	-		Sama_2075	0.66	-0.3
2,514,221	-		Sama_2075	0.66	+0.3
2,514,221	-		Sama_2075	0.66	-0.3
2,514,221	-		Sama_2075	0.66	+2.0
2,514,221	-		Sama_2075	0.66	+0.8
2,514,221	-		Sama_2075	0.66	-0.5
2,514,224	+		Sama_2075	0.67	+0.3
2,514,225	-		Sama_2075	0.67	+0.9
2,514,225	-		Sama_2075	0.67	+0.3
2,514,225	-		Sama_2075	0.67	+0.3
2,514,241	+		Sama_2075	0.71	-1.1
2,514,242	-		Sama_2075	0.71	-0.8
2,514,251	+		Sama_2075	0.73	-1.9
2,514,252	-		Sama_2075	0.73	+0.5
2,514,270	+		Sama_2075	0.77	+0.2
2,514,270	+		Sama_2075	0.77	+0.6
2,514,270	+		Sama_2075	0.77	+0.1
2,514,270	+		Sama_2075	0.77	-0.2
2,514,271	-		Sama_2075	0.78	-0.1
2,514,271	-		Sama_2075	0.78	-1.2
2,514,271	-		Sama_2075	0.78	+0.6
2,514,271	-		Sama_2075	0.78	-0.3
2,514,278	+		Sama_2075	0.79	+0.6
2,514,279	-		Sama_2075	0.80	-0.1
2,514,308	+		Sama_2075	0.86	-0.1
2,514,322	+		Sama_2075	0.90	-0.8
2,514,349	+				-0.4
2,514,349	+				+1.0
2,514,364	-				-0.0
2,514,458	-				+1.0
2,514,484	+				-0.1
2,514,498	-				+0.5
2,514,517	-				+1.0
2,514,517	-				+0.5
2,514,517	-				-0.3
2,514,528	-				-0.8
2,514,553	+				+1.0
2,514,553	+				-2.3
2,514,554	-				+0.8
2,514,555	+				-0.2