Experiment: Cobalt chloride 0.08 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_3677 and Shew_3678 are separated by 1 nucleotides Shew_3678 and Shew_3679 are separated by 237 nucleotides Shew_3679 and Shew_3680 are separated by 80 nucleotides
Shew_3677: Shew_3677 - isochorismate synthase (RefSeq), at 4,380,196 to 4,381,554
_3677
Shew_3678: Shew_3678 - hypothetical protein (RefSeq), at 4,381,556 to 4,382,311
_3678
Shew_3679: Shew_3679 - hypothetical protein (RefSeq), at 4,382,549 to 4,383,217
_3679
Shew_3680: Shew_3680 - GCN5-related N-acetyltransferase (RefSeq), at 4,383,298 to 4,383,759
_3680
Position (kb) 4381
4382
4383 Strain fitness (log2 ratio) -1
0
1 at 4380.573 kb on + strand, within Shew_3677 at 4380.829 kb on - strand, within Shew_3677 at 4380.843 kb on - strand, within Shew_3677 at 4380.898 kb on - strand, within Shew_3677 at 4381.212 kb on + strand, within Shew_3677 at 4381.212 kb on + strand, within Shew_3677 at 4381.246 kb on - strand, within Shew_3677 at 4381.548 kb on + strand at 4381.556 kb on - strand at 4381.639 kb on + strand, within Shew_3678 at 4381.647 kb on - strand, within Shew_3678 at 4381.647 kb on - strand, within Shew_3678 at 4381.774 kb on + strand, within Shew_3678 at 4381.825 kb on + strand, within Shew_3678 at 4381.855 kb on + strand, within Shew_3678 at 4381.908 kb on + strand, within Shew_3678 at 4381.908 kb on + strand, within Shew_3678 at 4381.934 kb on + strand, within Shew_3678 at 4381.968 kb on - strand, within Shew_3678 at 4382.829 kb on + strand, within Shew_3679 at 4382.847 kb on + strand, within Shew_3679 at 4382.961 kb on - strand, within Shew_3679 at 4383.062 kb on + strand, within Shew_3679 at 4383.154 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cobalt chloride 0.08 mM remove 4,380,573 + Shew_3677 0.28 +0.1 4,380,829 - Shew_3677 0.47 +0.4 4,380,843 - Shew_3677 0.48 -0.7 4,380,898 - Shew_3677 0.52 +0.0 4,381,212 + Shew_3677 0.75 -0.3 4,381,212 + Shew_3677 0.75 -0.0 4,381,246 - Shew_3677 0.77 -0.2 4,381,548 + +1.0 4,381,556 - -0.2 4,381,639 + Shew_3678 0.11 +0.2 4,381,647 - Shew_3678 0.12 -0.5 4,381,647 - Shew_3678 0.12 +1.6 4,381,774 + Shew_3678 0.29 +0.8 4,381,825 + Shew_3678 0.36 +0.1 4,381,855 + Shew_3678 0.40 +0.4 4,381,908 + Shew_3678 0.47 -0.5 4,381,908 + Shew_3678 0.47 -0.0 4,381,934 + Shew_3678 0.50 +0.8 4,381,968 - Shew_3678 0.54 +0.0 4,382,829 + Shew_3679 0.42 -0.1 4,382,847 + Shew_3679 0.45 -0.4 4,382,961 - Shew_3679 0.62 +0.2 4,383,062 + Shew_3679 0.77 +0.2 4,383,154 - -0.7
Or see this region's nucleotide sequence