Strain Fitness in Shewanella loihica PV-4 around Shew_2966

Experiment: Cobalt chloride 0.08 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2965 and Shew_2966 are separated by 119 nucleotidesShew_2966 and Shew_2967 are separated by 229 nucleotides Shew_2965: Shew_2965 - putative manganese transporter (RefSeq), at 3,517,568 to 3,518,836 _2965 Shew_2966: Shew_2966 - membrane-flanked domain-containing protein (RefSeq), at 3,518,956 to 3,519,486 _2966 Shew_2967: Shew_2967 - TonB-dependent receptor (RefSeq), at 3,519,716 to 3,522,289 _2967 Position (kb) 3518 3519 3520Strain fitness (log2 ratio) -2 -1 0 1at 3517.959 kb on - strand, within Shew_2965at 3517.997 kb on - strand, within Shew_2965at 3518.039 kb on + strand, within Shew_2965at 3518.179 kb on + strand, within Shew_2965at 3518.218 kb on + strand, within Shew_2965at 3518.516 kb on - strand, within Shew_2965at 3518.537 kb on - strand, within Shew_2965at 3518.591 kb on + strand, within Shew_2965at 3519.064 kb on - strand, within Shew_2966at 3519.707 kb on + strandat 3519.774 kb on + strandat 3519.973 kb on - strandat 3519.992 kb on - strand, within Shew_2967at 3520.215 kb on - strand, within Shew_2967at 3520.299 kb on + strand, within Shew_2967at 3520.307 kb on - strand, within Shew_2967at 3520.307 kb on - strand, within Shew_2967at 3520.307 kb on - strand, within Shew_2967

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.08 mM
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3,517,959 - Shew_2965 0.31 +0.4
3,517,997 - Shew_2965 0.34 -0.1
3,518,039 + Shew_2965 0.37 -0.1
3,518,179 + Shew_2965 0.48 -0.0
3,518,218 + Shew_2965 0.51 -0.2
3,518,516 - Shew_2965 0.75 -0.0
3,518,537 - Shew_2965 0.76 -0.1
3,518,591 + Shew_2965 0.81 -0.5
3,519,064 - Shew_2966 0.20 +0.3
3,519,707 + +0.1
3,519,774 + +0.1
3,519,973 - +0.2
3,519,992 - Shew_2967 0.11 -0.2
3,520,215 - Shew_2967 0.19 +0.5
3,520,299 + Shew_2967 0.23 +0.4
3,520,307 - Shew_2967 0.23 -2.6
3,520,307 - Shew_2967 0.23 +1.7
3,520,307 - Shew_2967 0.23 +0.1

Or see this region's nucleotide sequence