Strain Fitness in Shewanella loihica PV-4 around Shew_0962

Experiment: Cobalt chloride 0.08 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0960 and Shew_0961 are separated by 267 nucleotidesShew_0961 and Shew_0962 are separated by 125 nucleotidesShew_0962 and Shew_0963 are separated by 117 nucleotidesShew_0963 and Shew_0964 are separated by 110 nucleotides Shew_0960: Shew_0960 - hypothetical protein (RefSeq), at 1,103,827 to 1,104,777 _0960 Shew_0961: Shew_0961 - hypothetical protein (RefSeq), at 1,105,045 to 1,105,389 _0961 Shew_0962: Shew_0962 - hypothetical protein (RefSeq), at 1,105,515 to 1,105,685 _0962 Shew_0963: Shew_0963 - hypothetical protein (RefSeq), at 1,105,803 to 1,106,522 _0963 Shew_0964: Shew_0964 - protein of unknown function DUF861, cupin_3 (RefSeq), at 1,106,633 to 1,106,998 _0964 Position (kb) 1105 1106Strain fitness (log2 ratio) -1 0 1at 1105.402 kb on + strandat 1105.410 kb on - strandat 1105.654 kb on - strand, within Shew_0962at 1105.715 kb on - strandat 1105.878 kb on + strand, within Shew_0963at 1105.886 kb on - strand, within Shew_0963at 1105.891 kb on - strand, within Shew_0963at 1105.962 kb on - strand, within Shew_0963at 1105.971 kb on + strand, within Shew_0963at 1105.979 kb on - strand, within Shew_0963at 1105.995 kb on + strand, within Shew_0963at 1106.069 kb on - strand, within Shew_0963at 1106.450 kb on - strand, within Shew_0963

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.08 mM
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1,105,402 + +0.5
1,105,410 - -0.5
1,105,654 - Shew_0962 0.81 -1.5
1,105,715 - -0.3
1,105,878 + Shew_0963 0.10 +0.5
1,105,886 - Shew_0963 0.12 -0.6
1,105,891 - Shew_0963 0.12 -0.4
1,105,962 - Shew_0963 0.22 -0.3
1,105,971 + Shew_0963 0.23 -0.4
1,105,979 - Shew_0963 0.24 -0.3
1,105,995 + Shew_0963 0.27 +0.1
1,106,069 - Shew_0963 0.37 -0.1
1,106,450 - Shew_0963 0.90 -0.0

Or see this region's nucleotide sequence