Experiment: m.b. A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_3852 and Dshi_3853 are separated by 139 nucleotides Dshi_3853 and Dshi_3854 are separated by 47 nucleotides
Dshi_3852: Dshi_3852 - hypothetical protein (RefSeq), at 57,076 to 58,143
_3852
Dshi_3853: Dshi_3853 - Resolvase domain (RefSeq), at 58,283 to 59,263
_3853
Dshi_3854: Dshi_3854 - RepA (RefSeq), at 59,311 to 60,357
_3854
Position (kb) 58
59
60 Strain fitness (log2 ratio) -1
0
1
2 at 57.299 kb on + strand, within Dshi_3852 at 57.299 kb on + strand, within Dshi_3852 at 57.333 kb on - strand, within Dshi_3852 at 57.651 kb on - strand, within Dshi_3852 at 57.800 kb on + strand, within Dshi_3852 at 57.938 kb on + strand, within Dshi_3852 at 58.241 kb on + strand at 58.258 kb on + strand at 58.286 kb on + strand at 58.296 kb on + strand at 58.738 kb on + strand, within Dshi_3853 at 58.796 kb on - strand, within Dshi_3853 at 58.835 kb on - strand, within Dshi_3853 at 58.851 kb on + strand, within Dshi_3853 at 58.859 kb on - strand, within Dshi_3853 at 58.882 kb on + strand, within Dshi_3853 at 58.890 kb on - strand, within Dshi_3853 at 58.890 kb on - strand, within Dshi_3853 at 58.996 kb on - strand, within Dshi_3853 at 59.003 kb on + strand, within Dshi_3853 at 59.025 kb on + strand, within Dshi_3853 at 59.033 kb on - strand, within Dshi_3853 at 59.062 kb on + strand, within Dshi_3853 at 59.149 kb on + strand, within Dshi_3853 at 59.157 kb on - strand, within Dshi_3853 at 59.157 kb on - strand, within Dshi_3853 at 59.157 kb on - strand, within Dshi_3853 at 59.157 kb on - strand, within Dshi_3853 at 59.198 kb on - strand at 59.212 kb on + strand at 59.293 kb on - strand at 59.316 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.02 mg/ml remove 57,299 + Dshi_3852 0.21 -1.3 57,299 + Dshi_3852 0.21 +0.0 57,333 - Dshi_3852 0.24 +1.3 57,651 - Dshi_3852 0.54 -0.4 57,800 + Dshi_3852 0.68 -1.0 57,938 + Dshi_3852 0.81 -1.1 58,241 + -0.1 58,258 + +0.3 58,286 + -1.0 58,296 + +0.2 58,738 + Dshi_3853 0.46 -0.2 58,796 - Dshi_3853 0.52 +1.5 58,835 - Dshi_3853 0.56 -0.3 58,851 + Dshi_3853 0.58 -0.1 58,859 - Dshi_3853 0.59 +0.8 58,882 + Dshi_3853 0.61 -0.2 58,890 - Dshi_3853 0.62 -0.0 58,890 - Dshi_3853 0.62 +0.3 58,996 - Dshi_3853 0.73 -0.4 59,003 + Dshi_3853 0.73 -0.3 59,025 + Dshi_3853 0.76 +0.3 59,033 - Dshi_3853 0.76 +1.0 59,062 + Dshi_3853 0.79 -0.9 59,149 + Dshi_3853 0.88 -1.1 59,157 - Dshi_3853 0.89 +0.3 59,157 - Dshi_3853 0.89 +0.4 59,157 - Dshi_3853 0.89 -1.4 59,157 - Dshi_3853 0.89 +0.3 59,198 - +0.8 59,212 + +2.1 59,293 - -0.8 59,316 - -0.9
Or see this region's nucleotide sequence