Experiment: m.b. A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_3847 and Dshi_3848 are separated by 99 nucleotides Dshi_3848 and Dshi_3849 are separated by 27 nucleotides Dshi_3849 and Dshi_3850 are separated by 7 nucleotides Dshi_3850 and Dshi_3851 are separated by 63 nucleotides Dshi_3851 and Dshi_3852 are separated by 160 nucleotides
Dshi_3847: Dshi_3847 - ParB domain protein nuclease (RefSeq), at 54,662 to 55,786
_3847
Dshi_3848: Dshi_3848 - hypothetical protein (RefSeq), at 55,886 to 56,080
_3848
Dshi_3849: Dshi_3849 - hypothetical protein (RefSeq), at 56,108 to 56,320
_3849
Dshi_3850: Dshi_3850 - hypothetical protein (RefSeq), at 56,328 to 56,588
_3850
Dshi_3851: Dshi_3851 - hypothetical protein (RefSeq), at 56,652 to 56,915
_3851
Dshi_3852: Dshi_3852 - hypothetical protein (RefSeq), at 57,076 to 58,143
_3852
Position (kb) 56
57 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 55.751 kb on - strand at 55.775 kb on - strand at 55.852 kb on + strand at 55.906 kb on + strand, within Dshi_3848 at 55.978 kb on - strand, within Dshi_3848 at 56.085 kb on - strand at 56.088 kb on + strand at 56.089 kb on + strand at 56.097 kb on - strand at 56.098 kb on + strand at 56.098 kb on + strand at 56.098 kb on + strand at 56.106 kb on - strand at 56.108 kb on - strand at 56.108 kb on - strand at 56.113 kb on - strand at 56.114 kb on - strand at 56.127 kb on + strand at 56.132 kb on + strand, within Dshi_3849 at 56.155 kb on + strand, within Dshi_3849 at 56.181 kb on - strand, within Dshi_3849 at 56.181 kb on - strand, within Dshi_3849 at 56.206 kb on + strand, within Dshi_3849 at 56.215 kb on - strand, within Dshi_3849 at 56.241 kb on + strand, within Dshi_3849 at 56.249 kb on - strand, within Dshi_3849 at 56.254 kb on - strand, within Dshi_3849 at 56.324 kb on + strand at 56.326 kb on + strand at 56.327 kb on - strand at 56.354 kb on + strand, within Dshi_3850 at 56.372 kb on - strand, within Dshi_3850 at 56.396 kb on + strand, within Dshi_3850 at 56.404 kb on - strand, within Dshi_3850 at 56.414 kb on - strand, within Dshi_3850 at 56.414 kb on - strand, within Dshi_3850 at 56.441 kb on - strand, within Dshi_3850 at 56.447 kb on - strand, within Dshi_3850 at 56.497 kb on - strand, within Dshi_3850 at 56.509 kb on + strand, within Dshi_3850 at 56.560 kb on + strand, within Dshi_3850 at 56.568 kb on - strand at 56.643 kb on + strand at 56.711 kb on + strand, within Dshi_3851 at 56.754 kb on + strand, within Dshi_3851 at 56.762 kb on - strand, within Dshi_3851 at 56.785 kb on - strand, within Dshi_3851 at 56.835 kb on + strand, within Dshi_3851 at 56.836 kb on + strand, within Dshi_3851 at 56.856 kb on + strand, within Dshi_3851 at 56.856 kb on + strand, within Dshi_3851 at 56.856 kb on + strand, within Dshi_3851 at 56.856 kb on + strand, within Dshi_3851 at 56.856 kb on + strand, within Dshi_3851 at 56.872 kb on - strand, within Dshi_3851 at 56.887 kb on - strand, within Dshi_3851 at 56.887 kb on - strand, within Dshi_3851 at 56.892 kb on - strand at 57.006 kb on + strand at 57.007 kb on + strand at 57.014 kb on - strand at 57.015 kb on - strand at 57.160 kb on + strand at 57.160 kb on + strand at 57.168 kb on - strand at 57.195 kb on - strand, within Dshi_3852 at 57.299 kb on + strand, within Dshi_3852 at 57.299 kb on + strand, within Dshi_3852 at 57.333 kb on - strand, within Dshi_3852 at 57.651 kb on - strand, within Dshi_3852 at 57.800 kb on + strand, within Dshi_3852
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.02 mg/ml remove 55,751 - +0.2 55,775 - -4.0 55,852 + +2.8 55,906 + Dshi_3848 0.10 +0.3 55,978 - Dshi_3848 0.47 -2.7 56,085 - +1.1 56,088 + -1.4 56,089 + -0.4 56,097 - +0.5 56,098 + +0.8 56,098 + -0.9 56,098 + -0.4 56,106 - -1.6 56,108 - +2.9 56,108 - -0.3 56,113 - -0.6 56,114 - +1.2 56,127 + -1.4 56,132 + Dshi_3849 0.11 -0.3 56,155 + Dshi_3849 0.22 +0.3 56,181 - Dshi_3849 0.34 -1.4 56,181 - Dshi_3849 0.34 +0.3 56,206 + Dshi_3849 0.46 -1.6 56,215 - Dshi_3849 0.50 -0.8 56,241 + Dshi_3849 0.62 -1.0 56,249 - Dshi_3849 0.66 +1.1 56,254 - Dshi_3849 0.69 -0.9 56,324 + +0.3 56,326 + +0.3 56,327 - -0.7 56,354 + Dshi_3850 0.10 -0.5 56,372 - Dshi_3850 0.17 -2.7 56,396 + Dshi_3850 0.26 +0.3 56,404 - Dshi_3850 0.29 +2.3 56,414 - Dshi_3850 0.33 +1.2 56,414 - Dshi_3850 0.33 -0.3 56,441 - Dshi_3850 0.43 -1.2 56,447 - Dshi_3850 0.46 -1.1 56,497 - Dshi_3850 0.65 -0.3 56,509 + Dshi_3850 0.69 -1.5 56,560 + Dshi_3850 0.89 +1.3 56,568 - -2.6 56,643 + -0.6 56,711 + Dshi_3851 0.22 +3.1 56,754 + Dshi_3851 0.39 +0.3 56,762 - Dshi_3851 0.42 -0.6 56,785 - Dshi_3851 0.50 +0.2 56,835 + Dshi_3851 0.69 +0.5 56,836 + Dshi_3851 0.70 +2.1 56,856 + Dshi_3851 0.77 -0.4 56,856 + Dshi_3851 0.77 -0.2 56,856 + Dshi_3851 0.77 -1.1 56,856 + Dshi_3851 0.77 -0.1 56,856 + Dshi_3851 0.77 +1.6 56,872 - Dshi_3851 0.83 -0.5 56,887 - Dshi_3851 0.89 +0.5 56,887 - Dshi_3851 0.89 +0.9 56,892 - -0.5 57,006 + +1.0 57,007 + +0.2 57,014 - -0.7 57,015 - +0.5 57,160 + +0.3 57,160 + -0.4 57,168 - -0.5 57,195 - Dshi_3852 0.11 +0.4 57,299 + Dshi_3852 0.21 -1.3 57,299 + Dshi_3852 0.21 +0.0 57,333 - Dshi_3852 0.24 +1.3 57,651 - Dshi_3852 0.54 -0.4 57,800 + Dshi_3852 0.68 -1.0
Or see this region's nucleotide sequence