Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3647

Experiment: m.b. A22 0.02 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_3645 and Dshi_3646 are separated by 1 nucleotidesDshi_3646 and Dshi_3647 overlap by 4 nucleotidesDshi_3647 and Dshi_3648 are separated by 4 nucleotidesDshi_3648 and Dshi_3649 overlap by 4 nucleotides Dshi_3645: Dshi_3645 - VirB8 family protein (RefSeq), at 44,855 to 45,511 _3645 Dshi_3646: Dshi_3646 - Conjugal transfer protein TrbG/VirB9/CagX (RefSeq), at 45,513 to 46,208 _3646 Dshi_3647: Dshi_3647 - conjugation TrbI family protein (RefSeq), at 46,205 to 47,584 _3647 Dshi_3648: Dshi_3648 - type II secretion system protein E (RefSeq), at 47,589 to 48,575 _3648 Dshi_3649: Dshi_3649 - hypothetical protein (RefSeq), at 48,572 to 48,766 _3649 Position (kb) 46 47 48Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4at 45.206 kb on + strand, within Dshi_3645at 45.206 kb on + strand, within Dshi_3645at 45.209 kb on - strand, within Dshi_3645at 45.211 kb on - strand, within Dshi_3645at 45.216 kb on + strand, within Dshi_3645at 45.235 kb on - strand, within Dshi_3645at 45.235 kb on - strand, within Dshi_3645at 45.321 kb on - strand, within Dshi_3645at 45.350 kb on + strand, within Dshi_3645at 45.350 kb on + strand, within Dshi_3645at 45.351 kb on - strand, within Dshi_3645at 45.360 kb on - strand, within Dshi_3645at 45.379 kb on - strand, within Dshi_3645at 45.390 kb on - strand, within Dshi_3645at 45.390 kb on - strand, within Dshi_3645at 45.393 kb on - strand, within Dshi_3645at 45.442 kb on + strand, within Dshi_3645at 45.442 kb on + strand, within Dshi_3645at 45.442 kb on + strand, within Dshi_3645at 45.442 kb on + strand, within Dshi_3645at 45.442 kb on + strand, within Dshi_3645at 45.442 kb on + strand, within Dshi_3645at 45.442 kb on + strand, within Dshi_3645at 45.442 kb on + strand, within Dshi_3645at 45.442 kb on + strand, within Dshi_3645at 45.442 kb on + strand, within Dshi_3645at 45.442 kb on + strand, within Dshi_3645at 45.443 kb on + strand, within Dshi_3645at 45.447 kb on + strandat 45.450 kb on - strandat 45.451 kb on - strandat 45.455 kb on - strandat 45.455 kb on - strandat 45.455 kb on - strandat 45.464 kb on - strandat 45.470 kb on - strandat 45.470 kb on - strandat 45.546 kb on + strandat 45.559 kb on + strandat 45.562 kb on - strandat 45.562 kb on - strandat 45.566 kb on - strandat 45.567 kb on - strandat 45.567 kb on - strandat 45.567 kb on - strandat 45.567 kb on - strandat 45.567 kb on - strandat 45.622 kb on + strand, within Dshi_3646at 45.622 kb on + strand, within Dshi_3646at 45.622 kb on + strand, within Dshi_3646at 45.624 kb on + strand, within Dshi_3646at 45.630 kb on - strand, within Dshi_3646at 45.630 kb on - strand, within Dshi_3646at 45.633 kb on + strand, within Dshi_3646at 45.633 kb on - strand, within Dshi_3646at 45.638 kb on + strand, within Dshi_3646at 45.640 kb on - strand, within Dshi_3646at 45.641 kb on - strand, within Dshi_3646at 45.646 kb on - strand, within Dshi_3646at 45.672 kb on - strand, within Dshi_3646at 45.795 kb on + strand, within Dshi_3646at 45.803 kb on - strand, within Dshi_3646at 45.853 kb on - strand, within Dshi_3646at 45.869 kb on + strand, within Dshi_3646at 45.882 kb on - strand, within Dshi_3646at 45.895 kb on - strand, within Dshi_3646at 45.908 kb on + strand, within Dshi_3646at 45.915 kb on + strand, within Dshi_3646at 45.923 kb on - strand, within Dshi_3646at 45.928 kb on - strand, within Dshi_3646at 45.955 kb on - strand, within Dshi_3646at 45.981 kb on - strand, within Dshi_3646at 45.989 kb on + strand, within Dshi_3646at 46.007 kb on - strand, within Dshi_3646at 46.104 kb on - strand, within Dshi_3646at 46.104 kb on - strand, within Dshi_3646at 46.104 kb on - strand, within Dshi_3646at 46.190 kb on + strandat 46.248 kb on + strandat 46.261 kb on - strandat 46.271 kb on - strandat 46.312 kb on + strandat 46.522 kb on + strand, within Dshi_3647at 46.530 kb on - strand, within Dshi_3647at 46.530 kb on - strand, within Dshi_3647at 46.563 kb on + strand, within Dshi_3647at 46.701 kb on + strand, within Dshi_3647at 46.897 kb on + strand, within Dshi_3647at 46.954 kb on - strand, within Dshi_3647at 47.149 kb on + strand, within Dshi_3647at 47.181 kb on + strand, within Dshi_3647at 47.181 kb on + strand, within Dshi_3647at 47.230 kb on - strand, within Dshi_3647at 47.287 kb on - strand, within Dshi_3647at 47.293 kb on + strand, within Dshi_3647at 47.381 kb on - strand, within Dshi_3647at 47.447 kb on + strandat 47.473 kb on - strandat 47.504 kb on - strandat 47.719 kb on + strand, within Dshi_3648at 47.755 kb on - strand, within Dshi_3648at 47.837 kb on - strand, within Dshi_3648at 47.838 kb on - strand, within Dshi_3648at 47.838 kb on - strand, within Dshi_3648at 47.839 kb on - strand, within Dshi_3648at 47.839 kb on - strand, within Dshi_3648at 47.859 kb on - strand, within Dshi_3648at 48.008 kb on + strand, within Dshi_3648at 48.130 kb on + strand, within Dshi_3648at 48.138 kb on - strand, within Dshi_3648at 48.168 kb on - strand, within Dshi_3648at 48.178 kb on + strand, within Dshi_3648at 48.178 kb on + strand, within Dshi_3648at 48.186 kb on - strand, within Dshi_3648at 48.194 kb on + strand, within Dshi_3648at 48.202 kb on + strand, within Dshi_3648at 48.202 kb on - strand, within Dshi_3648at 48.210 kb on - strand, within Dshi_3648at 48.267 kb on - strand, within Dshi_3648at 48.317 kb on + strand, within Dshi_3648at 48.318 kb on + strand, within Dshi_3648at 48.351 kb on - strand, within Dshi_3648at 48.367 kb on - strand, within Dshi_3648at 48.385 kb on + strand, within Dshi_3648at 48.387 kb on + strand, within Dshi_3648at 48.407 kb on - strand, within Dshi_3648at 48.456 kb on - strand, within Dshi_3648at 48.555 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.02 mg/ml
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45,206 + Dshi_3645 0.53 -0.5
45,206 + Dshi_3645 0.53 +0.2
45,209 - Dshi_3645 0.54 +0.1
45,211 - Dshi_3645 0.54 +0.4
45,216 + Dshi_3645 0.55 -0.4
45,235 - Dshi_3645 0.58 -1.9
45,235 - Dshi_3645 0.58 +2.6
45,321 - Dshi_3645 0.71 +3.1
45,350 + Dshi_3645 0.75 +0.2
45,350 + Dshi_3645 0.75 -0.7
45,351 - Dshi_3645 0.75 -0.3
45,360 - Dshi_3645 0.77 -0.6
45,379 - Dshi_3645 0.80 -0.4
45,390 - Dshi_3645 0.81 -0.3
45,390 - Dshi_3645 0.81 -0.3
45,393 - Dshi_3645 0.82 +0.3
45,442 + Dshi_3645 0.89 +1.0
45,442 + Dshi_3645 0.89 -0.2
45,442 + Dshi_3645 0.89 -0.7
45,442 + Dshi_3645 0.89 +0.2
45,442 + Dshi_3645 0.89 +0.1
45,442 + Dshi_3645 0.89 +0.9
45,442 + Dshi_3645 0.89 +0.6
45,442 + Dshi_3645 0.89 -0.1
45,442 + Dshi_3645 0.89 -2.1
45,442 + Dshi_3645 0.89 +1.1
45,442 + Dshi_3645 0.89 -2.2
45,443 + Dshi_3645 0.89 +0.3
45,447 + -0.4
45,450 - -0.6
45,451 - -0.3
45,455 - -0.5
45,455 - +0.9
45,455 - +0.2
45,464 - +1.5
45,470 - -0.5
45,470 - -3.4
45,546 + -0.1
45,559 + -1.8
45,562 - -0.1
45,562 - -0.1
45,566 - +3.8
45,567 - -0.3
45,567 - -1.9
45,567 - +0.7
45,567 - -0.0
45,567 - -3.5
45,622 + Dshi_3646 0.16 +0.2
45,622 + Dshi_3646 0.16 +0.9
45,622 + Dshi_3646 0.16 +0.2
45,624 + Dshi_3646 0.16 -0.1
45,630 - Dshi_3646 0.17 -0.3
45,630 - Dshi_3646 0.17 +0.2
45,633 + Dshi_3646 0.17 +0.9
45,633 - Dshi_3646 0.17 -0.3
45,638 + Dshi_3646 0.18 +1.2
45,640 - Dshi_3646 0.18 +0.7
45,641 - Dshi_3646 0.18 -0.5
45,646 - Dshi_3646 0.19 +0.6
45,672 - Dshi_3646 0.23 +0.1
45,795 + Dshi_3646 0.41 +1.1
45,803 - Dshi_3646 0.42 -0.3
45,853 - Dshi_3646 0.49 +2.9
45,869 + Dshi_3646 0.51 -0.2
45,882 - Dshi_3646 0.53 -0.1
45,895 - Dshi_3646 0.55 -1.5
45,908 + Dshi_3646 0.57 -0.8
45,915 + Dshi_3646 0.58 -0.4
45,923 - Dshi_3646 0.59 +2.7
45,928 - Dshi_3646 0.60 -0.3
45,955 - Dshi_3646 0.64 -1.1
45,981 - Dshi_3646 0.67 -2.4
45,989 + Dshi_3646 0.68 -0.6
46,007 - Dshi_3646 0.71 -0.5
46,104 - Dshi_3646 0.85 +0.2
46,104 - Dshi_3646 0.85 -0.0
46,104 - Dshi_3646 0.85 -1.5
46,190 + -1.0
46,248 + -0.6
46,261 - +0.3
46,271 - +0.2
46,312 + -0.1
46,522 + Dshi_3647 0.23 -1.9
46,530 - Dshi_3647 0.24 -0.7
46,530 - Dshi_3647 0.24 -0.0
46,563 + Dshi_3647 0.26 -1.0
46,701 + Dshi_3647 0.36 -1.3
46,897 + Dshi_3647 0.50 -0.4
46,954 - Dshi_3647 0.54 -0.4
47,149 + Dshi_3647 0.68 +0.5
47,181 + Dshi_3647 0.71 -0.6
47,181 + Dshi_3647 0.71 -0.3
47,230 - Dshi_3647 0.74 +0.5
47,287 - Dshi_3647 0.78 -0.3
47,293 + Dshi_3647 0.79 +0.7
47,381 - Dshi_3647 0.85 -0.3
47,447 + +1.2
47,473 - +1.3
47,504 - +1.2
47,719 + Dshi_3648 0.13 +1.2
47,755 - Dshi_3648 0.17 -0.5
47,837 - Dshi_3648 0.25 -0.8
47,838 - Dshi_3648 0.25 -3.3
47,838 - Dshi_3648 0.25 -0.0
47,839 - Dshi_3648 0.25 -2.7
47,839 - Dshi_3648 0.25 +1.7
47,859 - Dshi_3648 0.27 +1.5
48,008 + Dshi_3648 0.42 -1.2
48,130 + Dshi_3648 0.55 -0.9
48,138 - Dshi_3648 0.56 -0.0
48,168 - Dshi_3648 0.59 -0.1
48,178 + Dshi_3648 0.60 +0.9
48,178 + Dshi_3648 0.60 -0.9
48,186 - Dshi_3648 0.60 +1.5
48,194 + Dshi_3648 0.61 +0.6
48,202 + Dshi_3648 0.62 +0.9
48,202 - Dshi_3648 0.62 -0.4
48,210 - Dshi_3648 0.63 +1.1
48,267 - Dshi_3648 0.69 -0.1
48,317 + Dshi_3648 0.74 +0.6
48,318 + Dshi_3648 0.74 -1.0
48,351 - Dshi_3648 0.77 +0.5
48,367 - Dshi_3648 0.79 -4.8
48,385 + Dshi_3648 0.81 -0.4
48,387 + Dshi_3648 0.81 -0.4
48,407 - Dshi_3648 0.83 +0.7
48,456 - Dshi_3648 0.88 +0.8
48,555 - -1.1

Or see this region's nucleotide sequence