Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3564
Experiment: m.b. A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | m.b. A22 0.02 mg/ml |
---|---|---|---|---|---|
remove | |||||
3,751,253 | - | +1.3 | |||
3,751,257 | - | -0.8 | |||
3,751,363 | - | -2.8 | |||
3,751,371 | - | -3.6 | |||
3,751,445 | + | -0.3 | |||
3,751,468 | + | +1.1 | |||
3,751,479 | - | +0.4 | |||
3,751,491 | - | -1.5 | |||
3,751,491 | - | -0.6 | |||
3,751,568 | + | -1.2 | |||
3,751,568 | + | +0.6 | |||
3,751,569 | + | -1.2 | |||
3,751,577 | - | -0.2 | |||
3,751,605 | - | -1.0 | |||
3,751,655 | + | Dshi_3564 | 0.14 | -1.1 | |
3,751,770 | - | Dshi_3564 | 0.43 | -0.6 | |
3,751,772 | - | Dshi_3564 | 0.44 | +2.4 | |
3,751,873 | + | Dshi_3564 | 0.69 | +0.0 | |
3,751,928 | - | Dshi_3564 | 0.83 | -0.6 | |
3,751,928 | - | Dshi_3564 | 0.83 | -0.6 | |
3,751,933 | + | Dshi_3564 | 0.84 | -0.3 | |
3,751,969 | - | +0.9 | |||
3,752,081 | - | -1.3 | |||
3,752,133 | + | Dshi_3565 | 0.11 | +1.8 | |
3,752,242 | - | Dshi_3565 | 0.20 | +0.8 | |
3,752,287 | - | Dshi_3565 | 0.24 | +0.0 | |
3,752,287 | - | Dshi_3565 | 0.24 | -3.1 | |
3,752,310 | + | Dshi_3565 | 0.26 | -0.9 | |
3,752,313 | - | Dshi_3565 | 0.26 | +0.7 | |
3,752,521 | - | Dshi_3565 | 0.43 | +1.0 | |
3,752,627 | - | Dshi_3565 | 0.52 | -0.2 |
Or see this region's nucleotide sequence