Experiment: m.b. A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_3294 and Dshi_3295 are separated by 20 nucleotides Dshi_3295 and Dshi_3296 are separated by 3 nucleotides Dshi_3296 and Dshi_3297 overlap by 4 nucleotides Dshi_3297 and Dshi_3298 are separated by 27 nucleotides
Dshi_3294: Dshi_3294 - deoxyxylulose-5-phosphate synthase (RefSeq), at 3,459,972 to 3,461,903
_3294
Dshi_3295: Dshi_3295 - Polyprenyl synthetase (RefSeq), at 3,461,924 to 3,462,799
_3295
Dshi_3296: Dshi_3296 - exodeoxyribonuclease VII, small subunit (RefSeq), at 3,462,803 to 3,463,045
_3296
Dshi_3297: Dshi_3297 - histone deacetylase superfamily (RefSeq), at 3,463,042 to 3,463,983
_3297
Dshi_3298: Dshi_3298 - hypothetical protein (RefSeq), at 3,464,011 to 3,464,559
_3298
Position (kb)
3462
3463
3464 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3461.825 kb on + strand at 3461.833 kb on - strand at 3462.436 kb on + strand, within Dshi_3295 at 3462.836 kb on - strand, within Dshi_3296 at 3463.089 kb on + strand at 3463.097 kb on - strand at 3463.107 kb on - strand at 3463.112 kb on - strand at 3463.239 kb on + strand, within Dshi_3297 at 3463.357 kb on + strand, within Dshi_3297 at 3463.449 kb on + strand, within Dshi_3297 at 3463.655 kb on - strand, within Dshi_3297 at 3463.747 kb on + strand, within Dshi_3297 at 3463.762 kb on + strand, within Dshi_3297 at 3463.793 kb on - strand, within Dshi_3297 at 3463.917 kb on + strand at 3463.963 kb on + strand at 3463.963 kb on + strand at 3463.963 kb on + strand at 3463.971 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.02 mg/ml remove 3,461,825 + +1.4 3,461,833 - -1.9 3,462,436 + Dshi_3295 0.58 -0.9 3,462,836 - Dshi_3296 0.14 +0.4 3,463,089 + +0.4 3,463,097 - +0.4 3,463,107 - +0.4 3,463,112 - -0.1 3,463,239 + Dshi_3297 0.21 -2.6 3,463,357 + Dshi_3297 0.33 -2.6 3,463,449 + Dshi_3297 0.43 +1.4 3,463,655 - Dshi_3297 0.65 -0.6 3,463,747 + Dshi_3297 0.75 +1.4 3,463,762 + Dshi_3297 0.76 +0.4 3,463,793 - Dshi_3297 0.80 +0.4 3,463,917 + -0.0 3,463,963 + +0.4 3,463,963 + -0.6 3,463,963 + +3.0 3,463,971 - -2.3
Or see this region's nucleotide sequence