Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3272

Experiment: m.b. A22 0.02 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_3271 and Dshi_3272 overlap by 4 nucleotidesDshi_3272 and Dshi_3273 are separated by 285 nucleotides Dshi_3271: Dshi_3271 - protein of unknown function DUF59 (RefSeq), at 3,435,991 to 3,437,064 _3271 Dshi_3272: Dshi_3272 - hypothetical protein (RefSeq), at 3,437,061 to 3,437,258 _3272 Dshi_3273: Dshi_3273 - lipid A biosynthesis acyltransferase (RefSeq), at 3,437,544 to 3,438,491 _3273 Position (kb) 3437 3438Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 3436.154 kb on + strand, within Dshi_3271at 3436.216 kb on - strand, within Dshi_3271at 3436.281 kb on - strand, within Dshi_3271at 3436.467 kb on + strand, within Dshi_3271at 3436.472 kb on + strand, within Dshi_3271at 3436.506 kb on + strand, within Dshi_3271at 3436.529 kb on - strand, within Dshi_3271at 3436.570 kb on + strand, within Dshi_3271at 3436.682 kb on - strand, within Dshi_3271at 3436.898 kb on + strand, within Dshi_3271at 3436.924 kb on - strand, within Dshi_3271at 3437.033 kb on - strandat 3437.064 kb on + strandat 3437.153 kb on - strand, within Dshi_3272at 3437.153 kb on - strand, within Dshi_3272at 3437.168 kb on - strand, within Dshi_3272at 3437.203 kb on - strand, within Dshi_3272at 3437.301 kb on - strandat 3437.301 kb on - strandat 3437.421 kb on + strandat 3437.428 kb on + strandat 3437.429 kb on + strandat 3437.571 kb on - strandat 3437.630 kb on + strandat 3437.663 kb on - strand, within Dshi_3273at 3437.684 kb on - strand, within Dshi_3273at 3437.738 kb on - strand, within Dshi_3273at 3437.766 kb on - strand, within Dshi_3273at 3437.825 kb on + strand, within Dshi_3273at 3437.839 kb on + strand, within Dshi_3273at 3437.883 kb on - strand, within Dshi_3273at 3437.899 kb on - strand, within Dshi_3273at 3437.923 kb on + strand, within Dshi_3273at 3437.993 kb on - strand, within Dshi_3273at 3438.228 kb on + strand, within Dshi_3273

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.02 mg/ml
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3,436,154 + Dshi_3271 0.15 +1.1
3,436,216 - Dshi_3271 0.21 -0.6
3,436,281 - Dshi_3271 0.27 -4.3
3,436,467 + Dshi_3271 0.44 -1.4
3,436,472 + Dshi_3271 0.45 -1.1
3,436,506 + Dshi_3271 0.48 +1.5
3,436,529 - Dshi_3271 0.50 +2.1
3,436,570 + Dshi_3271 0.54 +0.7
3,436,682 - Dshi_3271 0.64 -1.5
3,436,898 + Dshi_3271 0.84 -1.6
3,436,924 - Dshi_3271 0.87 -1.5
3,437,033 - -0.2
3,437,064 + -0.8
3,437,153 - Dshi_3272 0.46 +2.8
3,437,153 - Dshi_3272 0.46 -1.4
3,437,168 - Dshi_3272 0.54 +0.5
3,437,203 - Dshi_3272 0.72 -3.6
3,437,301 - +1.1
3,437,301 - +1.1
3,437,421 + -0.2
3,437,428 + +1.5
3,437,429 + -0.9
3,437,571 - -1.0
3,437,630 + +0.1
3,437,663 - Dshi_3273 0.13 -2.0
3,437,684 - Dshi_3273 0.15 +0.5
3,437,738 - Dshi_3273 0.20 -2.0
3,437,766 - Dshi_3273 0.23 +1.1
3,437,825 + Dshi_3273 0.30 -0.9
3,437,839 + Dshi_3273 0.31 +2.6
3,437,883 - Dshi_3273 0.36 +0.5
3,437,899 - Dshi_3273 0.37 +1.5
3,437,923 + Dshi_3273 0.40 -0.7
3,437,993 - Dshi_3273 0.47 -1.8
3,438,228 + Dshi_3273 0.72 -2.3

Or see this region's nucleotide sequence