Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3085
Experiment: m.b. A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | m.b. A22 0.02 mg/ml |
---|---|---|---|---|---|
remove | |||||
3,255,063 | - | -1.3 | |||
3,255,330 | - | Dshi_3085 | 0.16 | +1.7 | |
3,255,366 | - | Dshi_3085 | 0.18 | +0.2 | |
3,255,413 | - | Dshi_3085 | 0.21 | +0.7 | |
3,255,427 | + | Dshi_3085 | 0.22 | -1.3 | |
3,255,458 | - | Dshi_3085 | 0.24 | +0.7 | |
3,255,886 | + | Dshi_3085 | 0.49 | -1.6 | |
3,255,899 | + | Dshi_3085 | 0.49 | -2.5 | |
3,256,010 | - | Dshi_3085 | 0.56 | -0.3 | |
3,256,025 | - | Dshi_3085 | 0.57 | +0.7 | |
3,256,152 | - | Dshi_3085 | 0.64 | +0.1 | |
3,256,263 | - | Dshi_3085 | 0.71 | -1.3 | |
3,256,330 | + | Dshi_3085 | 0.75 | +2.3 | |
3,256,711 | - | +1.2 | |||
3,256,797 | + | +0.5 | |||
3,256,872 | - | Dshi_3086 | 0.10 | -0.9 | |
3,256,876 | + | Dshi_3086 | 0.11 | -2.1 | |
3,256,876 | + | Dshi_3086 | 0.11 | +1.4 | |
3,256,935 | - | Dshi_3086 | 0.16 | -4.0 | |
3,256,974 | - | Dshi_3086 | 0.20 | +2.3 | |
3,257,064 | + | Dshi_3086 | 0.28 | -1.5 | |
3,257,089 | - | Dshi_3086 | 0.31 | +0.1 | |
3,257,459 | - | Dshi_3086 | 0.66 | -0.9 | |
3,257,535 | - | Dshi_3086 | 0.73 | -2.6 | |
3,257,591 | + | Dshi_3086 | 0.79 | -0.3 | |
3,257,712 | + | +0.1 |
Or see this region's nucleotide sequence