Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2965

Experiment: m.b. A22 0.02 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2964 and Dshi_2965 are separated by 84 nucleotidesDshi_2965 and Dshi_2966 are separated by 168 nucleotides Dshi_2964: Dshi_2964 - basic membrane lipoprotein (RefSeq), at 3,130,346 to 3,131,509 _2964 Dshi_2965: Dshi_2965 - hypothetical protein (RefSeq), at 3,131,594 to 3,131,788 _2965 Dshi_2966: Dshi_2966 - 3-methyl-2-oxobutanoate hydroxymethyltransferase (RefSeq), at 3,131,957 to 3,132,778 _2966 Position (kb) 3131 3132Strain fitness (log2 ratio) -1 0 1 2at 3130.664 kb on + strand, within Dshi_2964at 3130.738 kb on + strand, within Dshi_2964at 3130.813 kb on + strand, within Dshi_2964at 3130.969 kb on - strand, within Dshi_2964at 3131.369 kb on + strand, within Dshi_2964at 3131.380 kb on + strand, within Dshi_2964at 3131.381 kb on + strand, within Dshi_2964at 3131.470 kb on + strandat 3131.570 kb on + strandat 3131.616 kb on + strand, within Dshi_2965at 3131.634 kb on + strand, within Dshi_2965at 3131.651 kb on - strand, within Dshi_2965at 3131.747 kb on + strand, within Dshi_2965at 3131.798 kb on - strandat 3131.846 kb on - strandat 3131.846 kb on - strandat 3131.915 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.02 mg/ml
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3,130,664 + Dshi_2964 0.27 -1.2
3,130,738 + Dshi_2964 0.34 -1.6
3,130,813 + Dshi_2964 0.40 +1.5
3,130,969 - Dshi_2964 0.54 +0.6
3,131,369 + Dshi_2964 0.88 +1.7
3,131,380 + Dshi_2964 0.89 +0.3
3,131,381 + Dshi_2964 0.89 +0.5
3,131,470 + +0.3
3,131,570 + +1.5
3,131,616 + Dshi_2965 0.11 +1.4
3,131,634 + Dshi_2965 0.21 +0.3
3,131,651 - Dshi_2965 0.29 +2.3
3,131,747 + Dshi_2965 0.78 -0.3
3,131,798 - -0.3
3,131,846 - +0.3
3,131,846 - +0.3
3,131,915 + +0.2

Or see this region's nucleotide sequence