Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2912
Experiment: m.b. A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | m.b. A22 0.02 mg/ml |
---|---|---|---|---|---|
remove | |||||
3,070,686 | + | Dshi_2910 | 0.79 | +1.7 | |
3,070,880 | + | +0.7 | |||
3,070,957 | + | -0.1 | |||
3,070,960 | - | Dshi_2911 | 0.10 | +0.9 | |
3,070,975 | - | Dshi_2911 | 0.13 | +0.0 | |
3,071,015 | - | Dshi_2911 | 0.18 | -1.3 | |
3,071,079 | - | Dshi_2911 | 0.28 | -0.9 | |
3,071,087 | - | Dshi_2911 | 0.29 | -0.3 | |
3,071,155 | + | Dshi_2911 | 0.39 | +0.7 | |
3,071,179 | + | Dshi_2911 | 0.42 | -2.0 | |
3,071,366 | + | Dshi_2911 | 0.69 | +0.7 | |
3,071,408 | + | Dshi_2911 | 0.76 | -1.6 | |
3,071,573 | + | +0.7 | |||
3,071,723 | + | Dshi_2912 | 0.65 | +0.7 | |
3,071,784 | + | -1.3 | |||
3,071,840 | - | +1.7 | |||
3,071,843 | + | +0.1 | |||
3,071,847 | - | +0.1 | |||
3,071,851 | - | +0.7 | |||
3,071,851 | - | +2.3 | |||
3,071,851 | - | -2.5 | |||
3,071,929 | + | -1.4 | |||
3,071,934 | + | +2.7 | |||
3,072,035 | + | Dshi_2913 | 0.12 | -3.5 | |
3,072,149 | - | Dshi_2913 | 0.23 | +0.7 | |
3,072,426 | - | Dshi_2913 | 0.52 | -0.7 | |
3,072,429 | - | Dshi_2913 | 0.52 | -0.8 | |
3,072,568 | - | Dshi_2913 | 0.67 | +0.5 | |
3,072,616 | - | Dshi_2913 | 0.72 | -0.3 | |
3,072,634 | - | Dshi_2913 | 0.74 | -0.3 |
Or see this region's nucleotide sequence