Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2843

Experiment: m.b. A22 0.02 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2842 and Dshi_2843 are separated by 23 nucleotidesDshi_2843 and Dshi_2844 overlap by 1 nucleotides Dshi_2842: Dshi_2842 - basic membrane lipoprotein (RefSeq), at 2,999,169 to 3,000,158 _2842 Dshi_2843: Dshi_2843 - ABC transporter related (RefSeq), at 3,000,182 to 3,001,828 _2843 Dshi_2844: Dshi_2844 - inner-membrane translocator (RefSeq), at 3,001,828 to 3,002,946 _2844 Position (kb) 3000 3001 3002Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 2999.242 kb on - strandat 2999.320 kb on - strand, within Dshi_2842at 2999.493 kb on + strand, within Dshi_2842at 2999.752 kb on - strand, within Dshi_2842at 3000.089 kb on + strandat 3000.117 kb on + strandat 3000.209 kb on + strandat 3000.368 kb on + strand, within Dshi_2843at 3000.390 kb on - strand, within Dshi_2843at 3000.560 kb on + strand, within Dshi_2843at 3000.579 kb on - strand, within Dshi_2843at 3000.655 kb on + strand, within Dshi_2843at 3000.871 kb on + strand, within Dshi_2843at 3000.935 kb on - strand, within Dshi_2843at 3000.965 kb on + strand, within Dshi_2843at 3001.060 kb on + strand, within Dshi_2843at 3001.060 kb on + strand, within Dshi_2843at 3001.060 kb on + strand, within Dshi_2843at 3001.089 kb on - strand, within Dshi_2843at 3001.097 kb on + strand, within Dshi_2843at 3001.354 kb on - strand, within Dshi_2843at 3001.472 kb on + strand, within Dshi_2843at 3001.608 kb on + strand, within Dshi_2843at 3001.760 kb on - strandat 3001.775 kb on + strandat 3001.996 kb on + strand, within Dshi_2844at 3002.162 kb on - strand, within Dshi_2844at 3002.220 kb on + strand, within Dshi_2844at 3002.244 kb on + strand, within Dshi_2844at 3002.287 kb on + strand, within Dshi_2844at 3002.328 kb on - strand, within Dshi_2844at 3002.423 kb on - strand, within Dshi_2844at 3002.430 kb on + strand, within Dshi_2844at 3002.512 kb on + strand, within Dshi_2844at 3002.664 kb on - strand, within Dshi_2844at 3002.774 kb on + strand, within Dshi_2844

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.02 mg/ml
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2,999,242 - +3.0
2,999,320 - Dshi_2842 0.15 -1.2
2,999,493 + Dshi_2842 0.33 -2.7
2,999,752 - Dshi_2842 0.59 -0.7
3,000,089 + -1.9
3,000,117 + -1.9
3,000,209 + -1.8
3,000,368 + Dshi_2843 0.11 -1.1
3,000,390 - Dshi_2843 0.13 +0.2
3,000,560 + Dshi_2843 0.23 +2.0
3,000,579 - Dshi_2843 0.24 -4.0
3,000,655 + Dshi_2843 0.29 +0.7
3,000,871 + Dshi_2843 0.42 -1.9
3,000,935 - Dshi_2843 0.46 -2.7
3,000,965 + Dshi_2843 0.48 -0.9
3,001,060 + Dshi_2843 0.53 -3.1
3,001,060 + Dshi_2843 0.53 +0.8
3,001,060 + Dshi_2843 0.53 +3.2
3,001,089 - Dshi_2843 0.55 +2.7
3,001,097 + Dshi_2843 0.56 +1.7
3,001,354 - Dshi_2843 0.71 -1.3
3,001,472 + Dshi_2843 0.78 +0.7
3,001,608 + Dshi_2843 0.87 +0.7
3,001,760 - -1.0
3,001,775 + +1.7
3,001,996 + Dshi_2844 0.15 -2.9
3,002,162 - Dshi_2844 0.30 +0.1
3,002,220 + Dshi_2844 0.35 -0.0
3,002,244 + Dshi_2844 0.37 -1.7
3,002,287 + Dshi_2844 0.41 +1.7
3,002,328 - Dshi_2844 0.45 -0.3
3,002,423 - Dshi_2844 0.53 +0.1
3,002,430 + Dshi_2844 0.54 +3.0
3,002,512 + Dshi_2844 0.61 +1.0
3,002,664 - Dshi_2844 0.75 +0.9
3,002,774 + Dshi_2844 0.85 +3.0

Or see this region's nucleotide sequence