Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2839

Experiment: m.b. A22 0.02 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2837 and Dshi_2838 are separated by 79 nucleotidesDshi_2838 and Dshi_2839 are separated by 89 nucleotidesDshi_2839 and Dshi_2840 are separated by 4 nucleotidesDshi_2840 and Dshi_2841 overlap by 4 nucleotides Dshi_2837: Dshi_2837 - aminotransferase class IV (RefSeq), at 2,995,862 to 2,996,722 _2837 Dshi_2838: Dshi_2838 - UspA domain protein (RefSeq), at 2,996,802 to 2,997,257 _2838 Dshi_2839: Dshi_2839 - Scaffold protein Nfu/NifU (RefSeq), at 2,997,347 to 2,997,910 _2839 Dshi_2840: Dshi_2840 - peptidase M22 glycoprotease (RefSeq), at 2,997,915 to 2,998,571 _2840 Dshi_2841: Dshi_2841 - ribosomal-protein-alanine acetyltransferase (RefSeq), at 2,998,568 to 2,998,987 _2841 Position (kb) 2997 2998Strain fitness (log2 ratio) -2 -1 0 1 2at 2996.438 kb on - strand, within Dshi_2837at 2996.551 kb on + strand, within Dshi_2837at 2996.551 kb on + strand, within Dshi_2837at 2996.851 kb on - strand, within Dshi_2838at 2996.920 kb on - strand, within Dshi_2838at 2996.952 kb on - strand, within Dshi_2838at 2997.275 kb on - strandat 2998.621 kb on + strand, within Dshi_2841at 2998.792 kb on - strand, within Dshi_2841at 2998.821 kb on - strand, within Dshi_2841at 2998.874 kb on + strand, within Dshi_2841at 2998.874 kb on + strand, within Dshi_2841at 2998.898 kb on - strand, within Dshi_2841

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.02 mg/ml
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2,996,438 - Dshi_2837 0.67 -0.6
2,996,551 + Dshi_2837 0.80 -0.9
2,996,551 + Dshi_2837 0.80 +0.5
2,996,851 - Dshi_2838 0.11 +2.2
2,996,920 - Dshi_2838 0.26 -2.3
2,996,952 - Dshi_2838 0.33 -0.6
2,997,275 - -0.9
2,998,621 + Dshi_2841 0.13 -0.7
2,998,792 - Dshi_2841 0.53 +0.7
2,998,821 - Dshi_2841 0.60 -0.3
2,998,874 + Dshi_2841 0.73 +1.2
2,998,874 + Dshi_2841 0.73 -0.8
2,998,898 - Dshi_2841 0.79 +0.7

Or see this region's nucleotide sequence