Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2830

Experiment: m.b. A22 0.02 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2829 and Dshi_2830 are separated by 76 nucleotidesDshi_2830 and Dshi_2831 are separated by 24 nucleotidesDshi_2831 and Dshi_2832 are separated by 110 nucleotides Dshi_2829: Dshi_2829 - glutathione synthetase (RefSeq), at 2,985,279 to 2,986,226 _2829 Dshi_2830: Dshi_2830 - protein of unknown function UPF0102 (RefSeq), at 2,986,303 to 2,986,707 _2830 Dshi_2831: Dshi_2831 - Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase (RefSeq), at 2,986,732 to 2,987,586 _2831 Dshi_2832: Dshi_2832 - extracellular ligand-binding receptor (RefSeq), at 2,987,697 to 2,988,881 _2832 Position (kb) 2986 2987Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2985.315 kb on + strandat 2986.144 kb on - strandat 2986.208 kb on - strandat 2986.380 kb on - strand, within Dshi_2830at 2986.478 kb on + strand, within Dshi_2830at 2986.653 kb on + strand, within Dshi_2830at 2986.680 kb on + strandat 2986.730 kb on - strandat 2986.739 kb on - strandat 2986.781 kb on - strandat 2986.818 kb on + strand, within Dshi_2831at 2986.826 kb on - strand, within Dshi_2831at 2986.858 kb on + strand, within Dshi_2831at 2986.977 kb on - strand, within Dshi_2831at 2987.211 kb on - strand, within Dshi_2831at 2987.211 kb on - strand, within Dshi_2831at 2987.257 kb on + strand, within Dshi_2831at 2987.364 kb on - strand, within Dshi_2831at 2987.406 kb on + strand, within Dshi_2831at 2987.502 kb on - strandat 2987.525 kb on - strandat 2987.575 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.02 mg/ml
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2,985,315 + +1.1
2,986,144 - -0.6
2,986,208 - -1.4
2,986,380 - Dshi_2830 0.19 -2.2
2,986,478 + Dshi_2830 0.43 -2.4
2,986,653 + Dshi_2830 0.86 -1.2
2,986,680 + +0.6
2,986,730 - -1.4
2,986,739 - -0.4
2,986,781 - -1.7
2,986,818 + Dshi_2831 0.10 -0.4
2,986,826 - Dshi_2831 0.11 +0.0
2,986,858 + Dshi_2831 0.15 -3.7
2,986,977 - Dshi_2831 0.29 +2.2
2,987,211 - Dshi_2831 0.56 -1.5
2,987,211 - Dshi_2831 0.56 +0.6
2,987,257 + Dshi_2831 0.61 +1.2
2,987,364 - Dshi_2831 0.74 +0.6
2,987,406 + Dshi_2831 0.79 +0.9
2,987,502 - -0.4
2,987,525 - +0.6
2,987,575 + +2.2

Or see this region's nucleotide sequence