Experiment: m.b. A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2823 and Dshi_2824 are separated by 103 nucleotides Dshi_2824 and Dshi_2825 are separated by 51 nucleotides
Dshi_2823: Dshi_2823 - aldo/keto reductase (RefSeq), at 2,979,098 to 2,980,144
_2823
Dshi_2824: Dshi_2824 - hypothetical protein (RefSeq), at 2,980,248 to 2,981,147
_2824
Dshi_2825: Dshi_2825 - 3-hydroxyacyl-CoA dehydrogenase NAD-binding (RefSeq), at 2,981,199 to 2,982,374
_2825
Position (kb)
2980
2981
2982 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2979.264 kb on + strand, within Dshi_2823 at 2979.289 kb on - strand, within Dshi_2823 at 2979.290 kb on - strand, within Dshi_2823 at 2979.329 kb on - strand, within Dshi_2823 at 2979.334 kb on - strand, within Dshi_2823 at 2979.455 kb on - strand, within Dshi_2823 at 2979.630 kb on + strand, within Dshi_2823 at 2979.660 kb on + strand, within Dshi_2823 at 2979.679 kb on + strand, within Dshi_2823 at 2979.692 kb on - strand, within Dshi_2823 at 2979.742 kb on + strand, within Dshi_2823 at 2979.893 kb on - strand, within Dshi_2823 at 2979.970 kb on + strand, within Dshi_2823 at 2979.989 kb on + strand, within Dshi_2823 at 2980.007 kb on - strand, within Dshi_2823 at 2980.042 kb on + strand at 2980.059 kb on + strand at 2980.109 kb on + strand at 2980.282 kb on + strand at 2980.342 kb on + strand, within Dshi_2824 at 2980.404 kb on + strand, within Dshi_2824 at 2980.568 kb on - strand, within Dshi_2824 at 2980.604 kb on - strand, within Dshi_2824 at 2980.626 kb on + strand, within Dshi_2824 at 2980.693 kb on - strand, within Dshi_2824 at 2980.714 kb on - strand, within Dshi_2824 at 2980.814 kb on - strand, within Dshi_2824 at 2980.847 kb on + strand, within Dshi_2824 at 2980.855 kb on - strand, within Dshi_2824 at 2980.922 kb on - strand, within Dshi_2824 at 2980.980 kb on + strand, within Dshi_2824 at 2981.099 kb on - strand at 2981.190 kb on + strand at 2981.196 kb on + strand at 2981.251 kb on - strand at 2981.378 kb on + strand, within Dshi_2825 at 2981.766 kb on - strand, within Dshi_2825 at 2981.770 kb on - strand, within Dshi_2825 at 2981.952 kb on + strand, within Dshi_2825 at 2982.040 kb on + strand, within Dshi_2825 at 2982.040 kb on + strand, within Dshi_2825 at 2982.043 kb on - strand, within Dshi_2825
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.02 mg/ml remove 2,979,264 + Dshi_2823 0.16 -0.5 2,979,289 - Dshi_2823 0.18 -1.9 2,979,290 - Dshi_2823 0.18 -1.7 2,979,329 - Dshi_2823 0.22 -0.4 2,979,334 - Dshi_2823 0.23 -1.5 2,979,455 - Dshi_2823 0.34 -2.8 2,979,630 + Dshi_2823 0.51 -0.2 2,979,660 + Dshi_2823 0.54 +0.6 2,979,679 + Dshi_2823 0.55 +0.6 2,979,692 - Dshi_2823 0.57 +2.0 2,979,742 + Dshi_2823 0.62 -1.9 2,979,893 - Dshi_2823 0.76 +2.2 2,979,970 + Dshi_2823 0.83 -0.2 2,979,989 + Dshi_2823 0.85 -1.7 2,980,007 - Dshi_2823 0.87 -1.1 2,980,042 + -0.7 2,980,059 + -1.7 2,980,109 + -3.7 2,980,282 + -0.9 2,980,342 + Dshi_2824 0.10 +2.2 2,980,404 + Dshi_2824 0.17 +1.8 2,980,568 - Dshi_2824 0.36 -2.5 2,980,604 - Dshi_2824 0.40 +0.5 2,980,626 + Dshi_2824 0.42 -1.5 2,980,693 - Dshi_2824 0.49 +0.6 2,980,714 - Dshi_2824 0.52 +0.9 2,980,814 - Dshi_2824 0.63 +2.2 2,980,847 + Dshi_2824 0.67 +1.6 2,980,855 - Dshi_2824 0.67 -0.9 2,980,922 - Dshi_2824 0.75 -0.9 2,980,980 + Dshi_2824 0.81 -0.4 2,981,099 - +1.1 2,981,190 + +1.0 2,981,196 + -0.1 2,981,251 - -0.8 2,981,378 + Dshi_2825 0.15 +1.6 2,981,766 - Dshi_2825 0.48 +0.2 2,981,770 - Dshi_2825 0.49 +0.6 2,981,952 + Dshi_2825 0.64 +0.7 2,982,040 + Dshi_2825 0.72 +0.6 2,982,040 + Dshi_2825 0.72 -0.9 2,982,043 - Dshi_2825 0.72 +0.6
Or see this region's nucleotide sequence