Experiment: m.b. A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2808 and Dshi_2809 are separated by 27 nucleotides Dshi_2809 and Dshi_2810 are separated by 81 nucleotides Dshi_2810 and Dshi_2811 overlap by 4 nucleotides Dshi_2811 and Dshi_2812 are separated by 21 nucleotides Dshi_2812 and Dshi_2813 are separated by 20 nucleotides
Dshi_2808: Dshi_2808 - thioredoxin SoxW (RefSeq), at 2,965,958 to 2,966,524
_2808
Dshi_2809: Dshi_2809 - cytochrome c biogenesis protein transmembrane region (RefSeq), at 2,966,552 to 2,967,286
_2809
Dshi_2810: Dshi_2810 - regulatory protein SoxS (RefSeq), at 2,967,368 to 2,967,775
_2810
Dshi_2811: Dshi_2811 - protein of unknown function DUF336 (RefSeq), at 2,967,772 to 2,968,284
_2811
Dshi_2812: Dshi_2812 - transcriptional regulator, ArsR family (RefSeq), at 2,968,306 to 2,968,641
_2812
Dshi_2813: Dshi_2813 - protein of unknown function DUF395 YeeE/YedE (RefSeq), at 2,968,662 to 2,969,750
_2813
Position (kb)
2967
2968 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 2966.433 kb on + strand, within Dshi_2808 at 2966.441 kb on - strand, within Dshi_2808 at 2966.441 kb on - strand, within Dshi_2808 at 2966.550 kb on + strand at 2966.798 kb on - strand, within Dshi_2809 at 2966.850 kb on + strand, within Dshi_2809 at 2966.998 kb on - strand, within Dshi_2809 at 2967.027 kb on - strand, within Dshi_2809 at 2967.041 kb on - strand, within Dshi_2809 at 2967.107 kb on - strand, within Dshi_2809 at 2967.119 kb on - strand, within Dshi_2809 at 2967.129 kb on - strand, within Dshi_2809 at 2967.170 kb on + strand, within Dshi_2809 at 2967.197 kb on - strand, within Dshi_2809 at 2967.211 kb on - strand, within Dshi_2809 at 2967.277 kb on + strand at 2967.399 kb on - strand at 2967.410 kb on - strand, within Dshi_2810 at 2967.415 kb on - strand, within Dshi_2810 at 2967.444 kb on + strand, within Dshi_2810 at 2967.489 kb on - strand, within Dshi_2810 at 2967.491 kb on + strand, within Dshi_2810 at 2967.523 kb on - strand, within Dshi_2810 at 2967.528 kb on - strand, within Dshi_2810 at 2967.585 kb on + strand, within Dshi_2810 at 2967.666 kb on - strand, within Dshi_2810 at 2967.666 kb on - strand, within Dshi_2810 at 2967.750 kb on + strand at 2967.750 kb on + strand at 2967.881 kb on - strand, within Dshi_2811 at 2967.931 kb on + strand, within Dshi_2811 at 2968.007 kb on - strand, within Dshi_2811 at 2968.015 kb on + strand, within Dshi_2811 at 2968.062 kb on - strand, within Dshi_2811 at 2968.224 kb on - strand, within Dshi_2811 at 2968.253 kb on - strand at 2968.310 kb on - strand at 2968.332 kb on + strand at 2968.340 kb on + strand, within Dshi_2812 at 2968.635 kb on + strand at 2968.732 kb on - strand at 2968.754 kb on - strand at 2968.754 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.02 mg/ml remove 2,966,433 + Dshi_2808 0.84 +1.1 2,966,441 - Dshi_2808 0.85 -3.7 2,966,441 - Dshi_2808 0.85 -0.2 2,966,550 + -0.8 2,966,798 - Dshi_2809 0.33 +0.1 2,966,850 + Dshi_2809 0.41 +2.9 2,966,998 - Dshi_2809 0.61 -1.8 2,967,027 - Dshi_2809 0.65 -0.3 2,967,041 - Dshi_2809 0.67 -1.0 2,967,107 - Dshi_2809 0.76 -1.0 2,967,119 - Dshi_2809 0.77 -1.5 2,967,129 - Dshi_2809 0.79 -0.9 2,967,170 + Dshi_2809 0.84 -0.4 2,967,197 - Dshi_2809 0.88 +1.0 2,967,211 - Dshi_2809 0.90 +1.1 2,967,277 + +0.6 2,967,399 - -1.4 2,967,410 - Dshi_2810 0.10 +0.6 2,967,415 - Dshi_2810 0.12 +0.1 2,967,444 + Dshi_2810 0.19 +0.2 2,967,489 - Dshi_2810 0.30 +0.0 2,967,491 + Dshi_2810 0.30 +0.1 2,967,523 - Dshi_2810 0.38 -2.5 2,967,528 - Dshi_2810 0.39 -2.1 2,967,585 + Dshi_2810 0.53 +1.6 2,967,666 - Dshi_2810 0.73 -0.8 2,967,666 - Dshi_2810 0.73 -0.2 2,967,750 + +0.8 2,967,750 + -0.5 2,967,881 - Dshi_2811 0.21 -0.4 2,967,931 + Dshi_2811 0.31 +0.6 2,968,007 - Dshi_2811 0.46 -1.0 2,968,015 + Dshi_2811 0.47 +0.2 2,968,062 - Dshi_2811 0.57 -1.4 2,968,224 - Dshi_2811 0.88 +2.6 2,968,253 - -1.9 2,968,310 - +0.7 2,968,332 + -2.9 2,968,340 + Dshi_2812 0.10 +0.6 2,968,635 + -2.5 2,968,732 - -3.9 2,968,754 - -1.4 2,968,754 - +0.2
Or see this region's nucleotide sequence