Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2810

Experiment: m.b. A22 0.02 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2808 and Dshi_2809 are separated by 27 nucleotidesDshi_2809 and Dshi_2810 are separated by 81 nucleotidesDshi_2810 and Dshi_2811 overlap by 4 nucleotidesDshi_2811 and Dshi_2812 are separated by 21 nucleotidesDshi_2812 and Dshi_2813 are separated by 20 nucleotides Dshi_2808: Dshi_2808 - thioredoxin SoxW (RefSeq), at 2,965,958 to 2,966,524 _2808 Dshi_2809: Dshi_2809 - cytochrome c biogenesis protein transmembrane region (RefSeq), at 2,966,552 to 2,967,286 _2809 Dshi_2810: Dshi_2810 - regulatory protein SoxS (RefSeq), at 2,967,368 to 2,967,775 _2810 Dshi_2811: Dshi_2811 - protein of unknown function DUF336 (RefSeq), at 2,967,772 to 2,968,284 _2811 Dshi_2812: Dshi_2812 - transcriptional regulator, ArsR family (RefSeq), at 2,968,306 to 2,968,641 _2812 Dshi_2813: Dshi_2813 - protein of unknown function DUF395 YeeE/YedE (RefSeq), at 2,968,662 to 2,969,750 _2813 Position (kb) 2967 2968Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 2966.433 kb on + strand, within Dshi_2808at 2966.441 kb on - strand, within Dshi_2808at 2966.441 kb on - strand, within Dshi_2808at 2966.550 kb on + strandat 2966.798 kb on - strand, within Dshi_2809at 2966.850 kb on + strand, within Dshi_2809at 2966.998 kb on - strand, within Dshi_2809at 2967.027 kb on - strand, within Dshi_2809at 2967.041 kb on - strand, within Dshi_2809at 2967.107 kb on - strand, within Dshi_2809at 2967.119 kb on - strand, within Dshi_2809at 2967.129 kb on - strand, within Dshi_2809at 2967.170 kb on + strand, within Dshi_2809at 2967.197 kb on - strand, within Dshi_2809at 2967.211 kb on - strand, within Dshi_2809at 2967.277 kb on + strandat 2967.399 kb on - strandat 2967.410 kb on - strand, within Dshi_2810at 2967.415 kb on - strand, within Dshi_2810at 2967.444 kb on + strand, within Dshi_2810at 2967.489 kb on - strand, within Dshi_2810at 2967.491 kb on + strand, within Dshi_2810at 2967.523 kb on - strand, within Dshi_2810at 2967.528 kb on - strand, within Dshi_2810at 2967.585 kb on + strand, within Dshi_2810at 2967.666 kb on - strand, within Dshi_2810at 2967.666 kb on - strand, within Dshi_2810at 2967.750 kb on + strandat 2967.750 kb on + strandat 2967.881 kb on - strand, within Dshi_2811at 2967.931 kb on + strand, within Dshi_2811at 2968.007 kb on - strand, within Dshi_2811at 2968.015 kb on + strand, within Dshi_2811at 2968.062 kb on - strand, within Dshi_2811at 2968.224 kb on - strand, within Dshi_2811at 2968.253 kb on - strandat 2968.310 kb on - strandat 2968.332 kb on + strandat 2968.340 kb on + strand, within Dshi_2812at 2968.635 kb on + strandat 2968.732 kb on - strandat 2968.754 kb on - strandat 2968.754 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.02 mg/ml
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2,966,433 + Dshi_2808 0.84 +1.1
2,966,441 - Dshi_2808 0.85 -3.7
2,966,441 - Dshi_2808 0.85 -0.2
2,966,550 + -0.8
2,966,798 - Dshi_2809 0.33 +0.1
2,966,850 + Dshi_2809 0.41 +2.9
2,966,998 - Dshi_2809 0.61 -1.8
2,967,027 - Dshi_2809 0.65 -0.3
2,967,041 - Dshi_2809 0.67 -1.0
2,967,107 - Dshi_2809 0.76 -1.0
2,967,119 - Dshi_2809 0.77 -1.5
2,967,129 - Dshi_2809 0.79 -0.9
2,967,170 + Dshi_2809 0.84 -0.4
2,967,197 - Dshi_2809 0.88 +1.0
2,967,211 - Dshi_2809 0.90 +1.1
2,967,277 + +0.6
2,967,399 - -1.4
2,967,410 - Dshi_2810 0.10 +0.6
2,967,415 - Dshi_2810 0.12 +0.1
2,967,444 + Dshi_2810 0.19 +0.2
2,967,489 - Dshi_2810 0.30 +0.0
2,967,491 + Dshi_2810 0.30 +0.1
2,967,523 - Dshi_2810 0.38 -2.5
2,967,528 - Dshi_2810 0.39 -2.1
2,967,585 + Dshi_2810 0.53 +1.6
2,967,666 - Dshi_2810 0.73 -0.8
2,967,666 - Dshi_2810 0.73 -0.2
2,967,750 + +0.8
2,967,750 + -0.5
2,967,881 - Dshi_2811 0.21 -0.4
2,967,931 + Dshi_2811 0.31 +0.6
2,968,007 - Dshi_2811 0.46 -1.0
2,968,015 + Dshi_2811 0.47 +0.2
2,968,062 - Dshi_2811 0.57 -1.4
2,968,224 - Dshi_2811 0.88 +2.6
2,968,253 - -1.9
2,968,310 - +0.7
2,968,332 + -2.9
2,968,340 + Dshi_2812 0.10 +0.6
2,968,635 + -2.5
2,968,732 - -3.9
2,968,754 - -1.4
2,968,754 - +0.2

Or see this region's nucleotide sequence