Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2808

Experiment: m.b. A22 0.02 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2806 and Dshi_2807 are separated by 35 nucleotidesDshi_2807 and Dshi_2808 are separated by 116 nucleotidesDshi_2808 and Dshi_2809 are separated by 27 nucleotidesDshi_2809 and Dshi_2810 are separated by 81 nucleotides Dshi_2806: Dshi_2806 - sulfur oxidation protein SoxY (RefSeq), at 2,964,907 to 2,965,323 _2806 Dshi_2807: Dshi_2807 - monoheme cytochrome c SoxX (RefSeq), at 2,965,359 to 2,965,841 _2807 Dshi_2808: Dshi_2808 - thioredoxin SoxW (RefSeq), at 2,965,958 to 2,966,524 _2808 Dshi_2809: Dshi_2809 - cytochrome c biogenesis protein transmembrane region (RefSeq), at 2,966,552 to 2,967,286 _2809 Dshi_2810: Dshi_2810 - regulatory protein SoxS (RefSeq), at 2,967,368 to 2,967,775 _2810 Position (kb) 2965 2966 2967Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2965.077 kb on + strand, within Dshi_2806at 2965.088 kb on + strand, within Dshi_2806at 2965.090 kb on - strand, within Dshi_2806at 2965.095 kb on - strand, within Dshi_2806at 2965.187 kb on - strand, within Dshi_2806at 2965.258 kb on + strand, within Dshi_2806at 2965.430 kb on + strand, within Dshi_2807at 2965.476 kb on - strand, within Dshi_2807at 2965.564 kb on + strand, within Dshi_2807at 2965.572 kb on - strand, within Dshi_2807at 2965.619 kb on - strand, within Dshi_2807at 2965.664 kb on + strand, within Dshi_2807at 2965.674 kb on + strand, within Dshi_2807at 2965.754 kb on - strand, within Dshi_2807at 2965.766 kb on - strand, within Dshi_2807at 2965.845 kb on - strandat 2965.895 kb on - strandat 2966.008 kb on + strandat 2966.019 kb on + strand, within Dshi_2808at 2966.027 kb on - strand, within Dshi_2808at 2966.118 kb on + strand, within Dshi_2808at 2966.143 kb on + strand, within Dshi_2808at 2966.144 kb on + strand, within Dshi_2808at 2966.144 kb on + strand, within Dshi_2808at 2966.154 kb on + strand, within Dshi_2808at 2966.200 kb on + strand, within Dshi_2808at 2966.208 kb on - strand, within Dshi_2808at 2966.433 kb on + strand, within Dshi_2808at 2966.441 kb on - strand, within Dshi_2808at 2966.441 kb on - strand, within Dshi_2808at 2966.550 kb on + strandat 2966.798 kb on - strand, within Dshi_2809at 2966.850 kb on + strand, within Dshi_2809at 2966.998 kb on - strand, within Dshi_2809at 2967.027 kb on - strand, within Dshi_2809at 2967.041 kb on - strand, within Dshi_2809at 2967.107 kb on - strand, within Dshi_2809at 2967.119 kb on - strand, within Dshi_2809at 2967.129 kb on - strand, within Dshi_2809at 2967.170 kb on + strand, within Dshi_2809at 2967.197 kb on - strand, within Dshi_2809at 2967.211 kb on - strand, within Dshi_2809at 2967.277 kb on + strandat 2967.399 kb on - strandat 2967.410 kb on - strand, within Dshi_2810at 2967.415 kb on - strand, within Dshi_2810at 2967.444 kb on + strand, within Dshi_2810at 2967.489 kb on - strand, within Dshi_2810at 2967.491 kb on + strand, within Dshi_2810at 2967.523 kb on - strand, within Dshi_2810

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.02 mg/ml
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2,965,077 + Dshi_2806 0.41 -1.5
2,965,088 + Dshi_2806 0.43 -2.0
2,965,090 - Dshi_2806 0.44 +0.1
2,965,095 - Dshi_2806 0.45 -0.5
2,965,187 - Dshi_2806 0.67 +1.4
2,965,258 + Dshi_2806 0.84 -0.5
2,965,430 + Dshi_2807 0.15 -0.5
2,965,476 - Dshi_2807 0.24 +2.6
2,965,564 + Dshi_2807 0.42 +0.2
2,965,572 - Dshi_2807 0.44 -0.4
2,965,619 - Dshi_2807 0.54 +0.8
2,965,664 + Dshi_2807 0.63 -0.6
2,965,674 + Dshi_2807 0.65 +0.6
2,965,754 - Dshi_2807 0.82 +1.9
2,965,766 - Dshi_2807 0.84 +0.6
2,965,845 - -0.7
2,965,895 - +0.3
2,966,008 + -2.4
2,966,019 + Dshi_2808 0.11 +2.6
2,966,027 - Dshi_2808 0.12 -2.8
2,966,118 + Dshi_2808 0.28 +1.1
2,966,143 + Dshi_2808 0.33 -2.4
2,966,144 + Dshi_2808 0.33 -0.4
2,966,144 + Dshi_2808 0.33 -2.3
2,966,154 + Dshi_2808 0.35 +0.9
2,966,200 + Dshi_2808 0.43 +0.6
2,966,208 - Dshi_2808 0.44 -1.7
2,966,433 + Dshi_2808 0.84 +1.1
2,966,441 - Dshi_2808 0.85 -3.7
2,966,441 - Dshi_2808 0.85 -0.2
2,966,550 + -0.8
2,966,798 - Dshi_2809 0.33 +0.1
2,966,850 + Dshi_2809 0.41 +2.9
2,966,998 - Dshi_2809 0.61 -1.8
2,967,027 - Dshi_2809 0.65 -0.3
2,967,041 - Dshi_2809 0.67 -1.0
2,967,107 - Dshi_2809 0.76 -1.0
2,967,119 - Dshi_2809 0.77 -1.5
2,967,129 - Dshi_2809 0.79 -0.9
2,967,170 + Dshi_2809 0.84 -0.4
2,967,197 - Dshi_2809 0.88 +1.0
2,967,211 - Dshi_2809 0.90 +1.1
2,967,277 + +0.6
2,967,399 - -1.4
2,967,410 - Dshi_2810 0.10 +0.6
2,967,415 - Dshi_2810 0.12 +0.1
2,967,444 + Dshi_2810 0.19 +0.2
2,967,489 - Dshi_2810 0.30 +0.0
2,967,491 + Dshi_2810 0.30 +0.1
2,967,523 - Dshi_2810 0.38 -2.5

Or see this region's nucleotide sequence