Experiment: m.b. A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2792 and Dshi_2793 overlap by 4 nucleotides Dshi_2793 and Dshi_2794 are separated by 22 nucleotides
Dshi_2792: Dshi_2792 - toxic anion resistance family protein (RefSeq), at 2,950,980 to 2,952,173
_2792
Dshi_2793: Dshi_2793 - lipoprotein, putative (RefSeq), at 2,952,170 to 2,953,117
_2793
Dshi_2794: Dshi_2794 - hypothetical protein (RefSeq), at 2,953,140 to 2,954,270
_2794
Position (kb)
2952
2953
2954 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 2951.191 kb on - strand, within Dshi_2792 at 2951.247 kb on + strand, within Dshi_2792 at 2951.390 kb on + strand, within Dshi_2792 at 2951.390 kb on + strand, within Dshi_2792 at 2951.447 kb on + strand, within Dshi_2792 at 2951.565 kb on - strand, within Dshi_2792 at 2951.587 kb on - strand, within Dshi_2792 at 2951.608 kb on + strand, within Dshi_2792 at 2951.623 kb on + strand, within Dshi_2792 at 2951.696 kb on + strand, within Dshi_2792 at 2951.778 kb on + strand, within Dshi_2792 at 2951.780 kb on + strand, within Dshi_2792 at 2951.788 kb on - strand, within Dshi_2792 at 2951.794 kb on - strand, within Dshi_2792 at 2951.813 kb on + strand, within Dshi_2792 at 2951.847 kb on + strand, within Dshi_2792 at 2952.009 kb on + strand, within Dshi_2792 at 2952.127 kb on - strand at 2952.147 kb on + strand at 2952.470 kb on - strand, within Dshi_2793 at 2952.470 kb on - strand, within Dshi_2793 at 2952.581 kb on + strand, within Dshi_2793 at 2952.581 kb on + strand, within Dshi_2793 at 2952.581 kb on + strand, within Dshi_2793 at 2952.589 kb on - strand, within Dshi_2793 at 2952.589 kb on - strand, within Dshi_2793 at 2952.667 kb on + strand, within Dshi_2793 at 2952.817 kb on - strand, within Dshi_2793 at 2952.833 kb on + strand, within Dshi_2793 at 2952.918 kb on + strand, within Dshi_2793 at 2952.947 kb on - strand, within Dshi_2793 at 2952.960 kb on - strand, within Dshi_2793 at 2953.089 kb on + strand at 2953.121 kb on - strand at 2953.260 kb on + strand, within Dshi_2794 at 2953.365 kb on + strand, within Dshi_2794 at 2953.377 kb on + strand, within Dshi_2794 at 2953.445 kb on + strand, within Dshi_2794 at 2953.517 kb on - strand, within Dshi_2794 at 2953.542 kb on - strand, within Dshi_2794 at 2953.605 kb on + strand, within Dshi_2794 at 2953.712 kb on + strand, within Dshi_2794 at 2953.826 kb on - strand, within Dshi_2794 at 2953.842 kb on + strand, within Dshi_2794 at 2954.048 kb on + strand, within Dshi_2794
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.02 mg/ml remove 2,951,191 - Dshi_2792 0.18 -0.7 2,951,247 + Dshi_2792 0.22 -2.6 2,951,390 + Dshi_2792 0.34 +0.6 2,951,390 + Dshi_2792 0.34 -2.4 2,951,447 + Dshi_2792 0.39 -1.2 2,951,565 - Dshi_2792 0.49 -0.7 2,951,587 - Dshi_2792 0.51 -1.0 2,951,608 + Dshi_2792 0.53 -2.2 2,951,623 + Dshi_2792 0.54 -2.6 2,951,696 + Dshi_2792 0.60 -1.4 2,951,778 + Dshi_2792 0.67 -3.1 2,951,780 + Dshi_2792 0.67 -1.4 2,951,788 - Dshi_2792 0.68 -2.0 2,951,794 - Dshi_2792 0.68 -1.2 2,951,813 + Dshi_2792 0.70 -2.6 2,951,847 + Dshi_2792 0.73 -3.4 2,952,009 + Dshi_2792 0.86 +0.6 2,952,127 - -2.4 2,952,147 + +0.6 2,952,470 - Dshi_2793 0.32 +1.2 2,952,470 - Dshi_2793 0.32 -0.7 2,952,581 + Dshi_2793 0.43 -2.9 2,952,581 + Dshi_2793 0.43 -3.1 2,952,581 + Dshi_2793 0.43 +0.6 2,952,589 - Dshi_2793 0.44 -0.4 2,952,589 - Dshi_2793 0.44 -1.0 2,952,667 + Dshi_2793 0.52 -0.4 2,952,817 - Dshi_2793 0.68 -3.0 2,952,833 + Dshi_2793 0.70 -0.9 2,952,918 + Dshi_2793 0.79 -0.4 2,952,947 - Dshi_2793 0.82 +0.6 2,952,960 - Dshi_2793 0.83 +0.9 2,953,089 + -1.4 2,953,121 - +0.6 2,953,260 + Dshi_2794 0.11 -2.2 2,953,365 + Dshi_2794 0.20 +0.6 2,953,377 + Dshi_2794 0.21 -3.9 2,953,445 + Dshi_2794 0.27 +0.6 2,953,517 - Dshi_2794 0.33 +0.6 2,953,542 - Dshi_2794 0.36 -3.0 2,953,605 + Dshi_2794 0.41 -0.4 2,953,712 + Dshi_2794 0.51 +0.6 2,953,826 - Dshi_2794 0.61 -1.0 2,953,842 + Dshi_2794 0.62 +2.2 2,954,048 + Dshi_2794 0.80 -0.8
Or see this region's nucleotide sequence