Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2683

Experiment: m.b. A22 0.02 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2682 and Dshi_2683 are separated by 192 nucleotidesDshi_2683 and Dshi_2684 are separated by 81 nucleotidesDshi_2684 and Dshi_2685 are separated by 394 nucleotides Dshi_2682: Dshi_2682 - glycine cleavage system T protein (RefSeq), at 2,842,546 to 2,843,631 _2682 Dshi_2683: Dshi_2683 - Aldose 1-epimerase (RefSeq), at 2,843,824 to 2,844,828 _2683 Dshi_2684: Dshi_2684 - Hydroxyisourate hydrolase (RefSeq), at 2,844,910 to 2,845,275 _2684 Dshi_2685: Dshi_2685 - Glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) (RefSeq), at 2,845,670 to 2,846,659 _2685 Position (kb) 2843 2844 2845Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2842.847 kb on + strand, within Dshi_2682at 2843.075 kb on + strand, within Dshi_2682at 2843.359 kb on - strand, within Dshi_2682at 2843.533 kb on - strandat 2843.799 kb on + strandat 2843.922 kb on - strandat 2843.942 kb on - strand, within Dshi_2683at 2844.020 kb on + strand, within Dshi_2683at 2844.195 kb on - strand, within Dshi_2683at 2844.196 kb on - strand, within Dshi_2683at 2844.280 kb on + strand, within Dshi_2683at 2844.280 kb on + strand, within Dshi_2683at 2844.285 kb on + strand, within Dshi_2683at 2844.300 kb on - strand, within Dshi_2683at 2844.407 kb on + strand, within Dshi_2683at 2844.407 kb on + strand, within Dshi_2683at 2844.430 kb on - strand, within Dshi_2683at 2844.556 kb on + strand, within Dshi_2683at 2844.786 kb on - strandat 2844.882 kb on + strandat 2844.901 kb on + strandat 2845.262 kb on - strandat 2845.339 kb on - strandat 2845.555 kb on - strandat 2845.586 kb on - strandat 2845.666 kb on - strandat 2845.808 kb on - strand, within Dshi_2685at 2845.818 kb on - strand, within Dshi_2685at 2845.827 kb on - strand, within Dshi_2685

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.02 mg/ml
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2,842,847 + Dshi_2682 0.28 -0.9
2,843,075 + Dshi_2682 0.49 +0.6
2,843,359 - Dshi_2682 0.75 -0.6
2,843,533 - -1.1
2,843,799 + +1.4
2,843,922 - +2.0
2,843,942 - Dshi_2683 0.12 +0.4
2,844,020 + Dshi_2683 0.20 -1.7
2,844,195 - Dshi_2683 0.37 -0.6
2,844,196 - Dshi_2683 0.37 +0.4
2,844,280 + Dshi_2683 0.45 -2.1
2,844,280 + Dshi_2683 0.45 -3.3
2,844,285 + Dshi_2683 0.46 -0.6
2,844,300 - Dshi_2683 0.47 -1.7
2,844,407 + Dshi_2683 0.58 -0.6
2,844,407 + Dshi_2683 0.58 +0.4
2,844,430 - Dshi_2683 0.60 -1.1
2,844,556 + Dshi_2683 0.73 -1.0
2,844,786 - -0.0
2,844,882 + -0.6
2,844,901 + +0.7
2,845,262 - +2.4
2,845,339 - +0.4
2,845,555 - -1.1
2,845,586 - +2.4
2,845,666 - -0.6
2,845,808 - Dshi_2685 0.14 -2.7
2,845,818 - Dshi_2685 0.15 +1.4
2,845,827 - Dshi_2685 0.16 -2.1

Or see this region's nucleotide sequence