Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2623

Experiment: m.b. A22 0.02 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2620 and Dshi_2621 are separated by 9 nucleotidesDshi_2621 and Dshi_2622 are separated by 53 nucleotidesDshi_2622 and Dshi_2623 are separated by 96 nucleotidesDshi_2623 and Dshi_2624 are separated by 136 nucleotidesDshi_2624 and Dshi_2625 are separated by 9 nucleotidesDshi_2625 and Dshi_2626 are separated by 103 nucleotides Dshi_2620: Dshi_2620 - hypothetical protein (RefSeq), at 2,781,369 to 2,781,725 _2620 Dshi_2621: Dshi_2621 - hypothetical protein (RefSeq), at 2,781,735 to 2,782,070 _2621 Dshi_2622: Dshi_2622 - hypothetical protein (RefSeq), at 2,782,124 to 2,782,372 _2622 Dshi_2623: Dshi_2623 - peptidase M48 Ste24p (RefSeq), at 2,782,469 to 2,783,221 _2623 Dshi_2624: Dshi_2624 - hypothetical protein (RefSeq), at 2,783,358 to 2,783,780 _2624 Dshi_2625: Dshi_2625 - hypothetical protein (RefSeq), at 2,783,790 to 2,784,044 _2625 Dshi_2626: Dshi_2626 - major facilitator superfamily MFS_1 (RefSeq), at 2,784,148 to 2,785,326 _2626 Position (kb) 2782 2783 2784Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2781.482 kb on - strand, within Dshi_2620at 2781.576 kb on - strand, within Dshi_2620at 2781.881 kb on - strand, within Dshi_2621at 2781.891 kb on - strand, within Dshi_2621at 2781.919 kb on - strand, within Dshi_2621at 2781.948 kb on - strand, within Dshi_2621at 2782.003 kb on + strand, within Dshi_2621at 2782.034 kb on + strand, within Dshi_2621at 2782.103 kb on - strandat 2782.114 kb on - strandat 2782.181 kb on - strand, within Dshi_2622at 2782.201 kb on + strand, within Dshi_2622at 2782.423 kb on + strandat 2782.489 kb on + strandat 2782.507 kb on + strandat 2782.661 kb on - strand, within Dshi_2623at 2782.709 kb on - strand, within Dshi_2623at 2782.785 kb on - strand, within Dshi_2623at 2782.801 kb on - strand, within Dshi_2623at 2782.820 kb on - strand, within Dshi_2623at 2782.969 kb on - strand, within Dshi_2623at 2783.040 kb on - strand, within Dshi_2623at 2783.349 kb on - strandat 2783.377 kb on - strandat 2783.523 kb on + strand, within Dshi_2624at 2783.526 kb on - strand, within Dshi_2624at 2783.526 kb on - strand, within Dshi_2624at 2783.531 kb on - strand, within Dshi_2624at 2783.531 kb on - strand, within Dshi_2624at 2783.536 kb on - strand, within Dshi_2624at 2783.582 kb on - strand, within Dshi_2624at 2783.687 kb on - strand, within Dshi_2624at 2783.694 kb on - strand, within Dshi_2624at 2783.845 kb on - strand, within Dshi_2625at 2783.864 kb on - strand, within Dshi_2625at 2783.907 kb on - strand, within Dshi_2625at 2783.908 kb on + strand, within Dshi_2625at 2783.933 kb on - strand, within Dshi_2625at 2783.933 kb on - strand, within Dshi_2625at 2783.933 kb on - strand, within Dshi_2625at 2783.933 kb on - strand, within Dshi_2625at 2783.979 kb on + strand, within Dshi_2625at 2783.987 kb on - strand, within Dshi_2625at 2784.146 kb on + strandat 2784.169 kb on + strandat 2784.191 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.02 mg/ml
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2,781,482 - Dshi_2620 0.32 +0.2
2,781,576 - Dshi_2620 0.58 -2.3
2,781,881 - Dshi_2621 0.43 -0.7
2,781,891 - Dshi_2621 0.46 -1.3
2,781,919 - Dshi_2621 0.55 -0.1
2,781,948 - Dshi_2621 0.63 +0.3
2,782,003 + Dshi_2621 0.80 +0.3
2,782,034 + Dshi_2621 0.89 +0.3
2,782,103 - -2.0
2,782,114 - -3.0
2,782,181 - Dshi_2622 0.23 -2.3
2,782,201 + Dshi_2622 0.31 +1.9
2,782,423 + -1.8
2,782,489 + -2.3
2,782,507 + -0.9
2,782,661 - Dshi_2623 0.25 +1.1
2,782,709 - Dshi_2623 0.32 +0.5
2,782,785 - Dshi_2623 0.42 +0.1
2,782,801 - Dshi_2623 0.44 -2.5
2,782,820 - Dshi_2623 0.47 +0.9
2,782,969 - Dshi_2623 0.66 +0.4
2,783,040 - Dshi_2623 0.76 +1.3
2,783,349 - -2.3
2,783,377 - +0.9
2,783,523 + Dshi_2624 0.39 -0.7
2,783,526 - Dshi_2624 0.40 -0.5
2,783,526 - Dshi_2624 0.40 +0.0
2,783,531 - Dshi_2624 0.41 +0.3
2,783,531 - Dshi_2624 0.41 +0.3
2,783,536 - Dshi_2624 0.42 -0.4
2,783,582 - Dshi_2624 0.53 +2.9
2,783,687 - Dshi_2624 0.78 +1.7
2,783,694 - Dshi_2624 0.79 -2.2
2,783,845 - Dshi_2625 0.22 -2.4
2,783,864 - Dshi_2625 0.29 +0.3
2,783,907 - Dshi_2625 0.46 +2.3
2,783,908 + Dshi_2625 0.46 -0.4
2,783,933 - Dshi_2625 0.56 +0.3
2,783,933 - Dshi_2625 0.56 +1.9
2,783,933 - Dshi_2625 0.56 +0.2
2,783,933 - Dshi_2625 0.56 -2.5
2,783,979 + Dshi_2625 0.74 +0.3
2,783,987 - Dshi_2625 0.77 -0.4
2,784,146 + -0.3
2,784,169 + -3.1
2,784,191 + +1.0

Or see this region's nucleotide sequence