Experiment: m.b. A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2620 and Dshi_2621 are separated by 9 nucleotides Dshi_2621 and Dshi_2622 are separated by 53 nucleotides Dshi_2622 and Dshi_2623 are separated by 96 nucleotides Dshi_2623 and Dshi_2624 are separated by 136 nucleotides Dshi_2624 and Dshi_2625 are separated by 9 nucleotides Dshi_2625 and Dshi_2626 are separated by 103 nucleotides
Dshi_2620: Dshi_2620 - hypothetical protein (RefSeq), at 2,781,369 to 2,781,725
_2620
Dshi_2621: Dshi_2621 - hypothetical protein (RefSeq), at 2,781,735 to 2,782,070
_2621
Dshi_2622: Dshi_2622 - hypothetical protein (RefSeq), at 2,782,124 to 2,782,372
_2622
Dshi_2623: Dshi_2623 - peptidase M48 Ste24p (RefSeq), at 2,782,469 to 2,783,221
_2623
Dshi_2624: Dshi_2624 - hypothetical protein (RefSeq), at 2,783,358 to 2,783,780
_2624
Dshi_2625: Dshi_2625 - hypothetical protein (RefSeq), at 2,783,790 to 2,784,044
_2625
Dshi_2626: Dshi_2626 - major facilitator superfamily MFS_1 (RefSeq), at 2,784,148 to 2,785,326
_2626
Position (kb)
2782
2783
2784 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2781.482 kb on - strand, within Dshi_2620 at 2781.576 kb on - strand, within Dshi_2620 at 2781.881 kb on - strand, within Dshi_2621 at 2781.891 kb on - strand, within Dshi_2621 at 2781.919 kb on - strand, within Dshi_2621 at 2781.948 kb on - strand, within Dshi_2621 at 2782.003 kb on + strand, within Dshi_2621 at 2782.034 kb on + strand, within Dshi_2621 at 2782.103 kb on - strand at 2782.114 kb on - strand at 2782.181 kb on - strand, within Dshi_2622 at 2782.201 kb on + strand, within Dshi_2622 at 2782.423 kb on + strand at 2782.489 kb on + strand at 2782.507 kb on + strand at 2782.661 kb on - strand, within Dshi_2623 at 2782.709 kb on - strand, within Dshi_2623 at 2782.785 kb on - strand, within Dshi_2623 at 2782.801 kb on - strand, within Dshi_2623 at 2782.820 kb on - strand, within Dshi_2623 at 2782.969 kb on - strand, within Dshi_2623 at 2783.040 kb on - strand, within Dshi_2623 at 2783.349 kb on - strand at 2783.377 kb on - strand at 2783.523 kb on + strand, within Dshi_2624 at 2783.526 kb on - strand, within Dshi_2624 at 2783.526 kb on - strand, within Dshi_2624 at 2783.531 kb on - strand, within Dshi_2624 at 2783.531 kb on - strand, within Dshi_2624 at 2783.536 kb on - strand, within Dshi_2624 at 2783.582 kb on - strand, within Dshi_2624 at 2783.687 kb on - strand, within Dshi_2624 at 2783.694 kb on - strand, within Dshi_2624 at 2783.845 kb on - strand, within Dshi_2625 at 2783.864 kb on - strand, within Dshi_2625 at 2783.907 kb on - strand, within Dshi_2625 at 2783.908 kb on + strand, within Dshi_2625 at 2783.933 kb on - strand, within Dshi_2625 at 2783.933 kb on - strand, within Dshi_2625 at 2783.933 kb on - strand, within Dshi_2625 at 2783.933 kb on - strand, within Dshi_2625 at 2783.979 kb on + strand, within Dshi_2625 at 2783.987 kb on - strand, within Dshi_2625 at 2784.146 kb on + strand at 2784.169 kb on + strand at 2784.191 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.02 mg/ml remove 2,781,482 - Dshi_2620 0.32 +0.2 2,781,576 - Dshi_2620 0.58 -2.3 2,781,881 - Dshi_2621 0.43 -0.7 2,781,891 - Dshi_2621 0.46 -1.3 2,781,919 - Dshi_2621 0.55 -0.1 2,781,948 - Dshi_2621 0.63 +0.3 2,782,003 + Dshi_2621 0.80 +0.3 2,782,034 + Dshi_2621 0.89 +0.3 2,782,103 - -2.0 2,782,114 - -3.0 2,782,181 - Dshi_2622 0.23 -2.3 2,782,201 + Dshi_2622 0.31 +1.9 2,782,423 + -1.8 2,782,489 + -2.3 2,782,507 + -0.9 2,782,661 - Dshi_2623 0.25 +1.1 2,782,709 - Dshi_2623 0.32 +0.5 2,782,785 - Dshi_2623 0.42 +0.1 2,782,801 - Dshi_2623 0.44 -2.5 2,782,820 - Dshi_2623 0.47 +0.9 2,782,969 - Dshi_2623 0.66 +0.4 2,783,040 - Dshi_2623 0.76 +1.3 2,783,349 - -2.3 2,783,377 - +0.9 2,783,523 + Dshi_2624 0.39 -0.7 2,783,526 - Dshi_2624 0.40 -0.5 2,783,526 - Dshi_2624 0.40 +0.0 2,783,531 - Dshi_2624 0.41 +0.3 2,783,531 - Dshi_2624 0.41 +0.3 2,783,536 - Dshi_2624 0.42 -0.4 2,783,582 - Dshi_2624 0.53 +2.9 2,783,687 - Dshi_2624 0.78 +1.7 2,783,694 - Dshi_2624 0.79 -2.2 2,783,845 - Dshi_2625 0.22 -2.4 2,783,864 - Dshi_2625 0.29 +0.3 2,783,907 - Dshi_2625 0.46 +2.3 2,783,908 + Dshi_2625 0.46 -0.4 2,783,933 - Dshi_2625 0.56 +0.3 2,783,933 - Dshi_2625 0.56 +1.9 2,783,933 - Dshi_2625 0.56 +0.2 2,783,933 - Dshi_2625 0.56 -2.5 2,783,979 + Dshi_2625 0.74 +0.3 2,783,987 - Dshi_2625 0.77 -0.4 2,784,146 + -0.3 2,784,169 + -3.1 2,784,191 + +1.0
Or see this region's nucleotide sequence