Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2575

Experiment: m.b. A22 0.02 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2573 and Dshi_2574 are separated by 270 nucleotidesDshi_2574 and Dshi_2575 are separated by 88 nucleotidesDshi_2575 and Dshi_2576 overlap by 4 nucleotidesDshi_2576 and Dshi_2577 are separated by 100 nucleotides Dshi_2573: Dshi_2573 - hypothetical protein (RefSeq), at 2,740,015 to 2,740,470 _2573 Dshi_2574: Dshi_2574 - CoA-binding domain protein (RefSeq), at 2,740,741 to 2,741,226 _2574 Dshi_2575: Dshi_2575 - phosphoribosyl-ATP pyrophosphohydrolase (RefSeq), at 2,741,315 to 2,741,623 _2575 Dshi_2576: Dshi_2576 - imidazoleglycerol phosphate synthase, cyclase subunit (RefSeq), at 2,741,620 to 2,742,381 _2576 Dshi_2577: Dshi_2577 - putative RNA methylase (RefSeq), at 2,742,482 to 2,743,606 _2577 Position (kb) 2741 2742Strain fitness (log2 ratio) -3 -2 -1 0 1at 2740.325 kb on - strand, within Dshi_2573at 2740.425 kb on - strandat 2740.459 kb on + strandat 2740.459 kb on + strandat 2740.467 kb on - strandat 2740.478 kb on + strandat 2740.478 kb on + strandat 2740.486 kb on - strandat 2740.502 kb on + strandat 2740.554 kb on - strandat 2740.607 kb on + strandat 2740.683 kb on - strandat 2740.815 kb on - strand, within Dshi_2574at 2741.201 kb on - strandat 2741.213 kb on + strandat 2742.564 kb on + strandat 2742.619 kb on - strand, within Dshi_2577

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.02 mg/ml
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2,740,325 - Dshi_2573 0.68 +0.4
2,740,425 - -0.1
2,740,459 + +0.8
2,740,459 + +0.4
2,740,467 - -1.8
2,740,478 + +1.4
2,740,478 + -2.2
2,740,486 - -0.7
2,740,502 + -0.8
2,740,554 - -1.1
2,740,607 + +0.4
2,740,683 - -1.3
2,740,815 - Dshi_2574 0.15 +0.5
2,741,201 - +0.1
2,741,213 + -3.0
2,742,564 + -0.6
2,742,619 - Dshi_2577 0.12 -0.0

Or see this region's nucleotide sequence