Experiment: m.b. A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2444 and Dshi_2445 overlap by 1 nucleotides Dshi_2445 and Dshi_2446 are separated by 1 nucleotides Dshi_2446 and Dshi_2447 overlap by 4 nucleotides
Dshi_2444: Dshi_2444 - 4-hydroxythreonine-4-phosphate dehydrogenase (RefSeq), at 2,587,296 to 2,588,300
_2444
Dshi_2445: Dshi_2445 - transcriptional regulator, GntR family (RefSeq), at 2,588,300 to 2,589,013
_2445
Dshi_2446: Dshi_2446 - dihydrodipicolinate synthetase (RefSeq), at 2,589,015 to 2,589,926
_2446
Dshi_2447: Dshi_2447 - Mandelate racemase/muconate lactonizing protein (RefSeq), at 2,589,923 to 2,591,098
_2447
Position (kb)
2589
2590 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 2588.085 kb on + strand, within Dshi_2444 at 2588.125 kb on - strand, within Dshi_2444 at 2588.125 kb on - strand, within Dshi_2444 at 2588.259 kb on + strand at 2588.259 kb on - strand at 2588.260 kb on + strand at 2588.369 kb on - strand at 2588.410 kb on - strand, within Dshi_2445 at 2588.427 kb on - strand, within Dshi_2445 at 2588.583 kb on - strand, within Dshi_2445 at 2588.674 kb on + strand, within Dshi_2445 at 2588.682 kb on - strand, within Dshi_2445 at 2588.689 kb on + strand, within Dshi_2445 at 2588.764 kb on + strand, within Dshi_2445 at 2588.874 kb on - strand, within Dshi_2445 at 2588.961 kb on + strand at 2588.994 kb on - strand at 2589.011 kb on - strand at 2589.040 kb on - strand at 2589.094 kb on + strand at 2589.144 kb on + strand, within Dshi_2446 at 2589.252 kb on - strand, within Dshi_2446 at 2589.265 kb on + strand, within Dshi_2446 at 2589.273 kb on - strand, within Dshi_2446 at 2589.273 kb on - strand, within Dshi_2446 at 2589.273 kb on - strand, within Dshi_2446 at 2589.273 kb on - strand, within Dshi_2446 at 2589.424 kb on - strand, within Dshi_2446 at 2589.430 kb on + strand, within Dshi_2446 at 2589.440 kb on + strand, within Dshi_2446 at 2589.718 kb on + strand, within Dshi_2446 at 2589.741 kb on + strand, within Dshi_2446 at 2589.749 kb on - strand, within Dshi_2446 at 2589.779 kb on + strand, within Dshi_2446 at 2589.808 kb on - strand, within Dshi_2446 at 2589.812 kb on - strand, within Dshi_2446 at 2589.876 kb on - strand at 2589.901 kb on + strand at 2589.994 kb on - strand at 2590.114 kb on - strand, within Dshi_2447 at 2590.116 kb on - strand, within Dshi_2447 at 2590.126 kb on - strand, within Dshi_2447 at 2590.171 kb on - strand, within Dshi_2447 at 2590.181 kb on - strand, within Dshi_2447 at 2590.181 kb on - strand, within Dshi_2447 at 2590.185 kb on + strand, within Dshi_2447 at 2590.251 kb on + strand, within Dshi_2447 at 2590.275 kb on - strand, within Dshi_2447 at 2590.293 kb on - strand, within Dshi_2447 at 2590.337 kb on - strand, within Dshi_2447 at 2590.344 kb on - strand, within Dshi_2447 at 2590.375 kb on + strand, within Dshi_2447 at 2590.397 kb on - strand, within Dshi_2447 at 2590.466 kb on - strand, within Dshi_2447 at 2590.478 kb on + strand, within Dshi_2447 at 2590.478 kb on + strand, within Dshi_2447 at 2590.505 kb on - strand, within Dshi_2447 at 2590.506 kb on + strand, within Dshi_2447 at 2590.506 kb on + strand, within Dshi_2447 at 2590.538 kb on + strand, within Dshi_2447 at 2590.610 kb on - strand, within Dshi_2447 at 2590.613 kb on + strand, within Dshi_2447 at 2590.644 kb on + strand, within Dshi_2447 at 2590.646 kb on + strand, within Dshi_2447 at 2590.673 kb on - strand, within Dshi_2447 at 2590.791 kb on - strand, within Dshi_2447
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.02 mg/ml remove 2,588,085 + Dshi_2444 0.79 -0.5 2,588,125 - Dshi_2444 0.82 -4.4 2,588,125 - Dshi_2444 0.82 -0.3 2,588,259 + +0.2 2,588,259 - -0.8 2,588,260 + -0.1 2,588,369 - -2.3 2,588,410 - Dshi_2445 0.15 -0.8 2,588,427 - Dshi_2445 0.18 +0.1 2,588,583 - Dshi_2445 0.40 -0.4 2,588,674 + Dshi_2445 0.52 -0.9 2,588,682 - Dshi_2445 0.54 +0.2 2,588,689 + Dshi_2445 0.54 -1.6 2,588,764 + Dshi_2445 0.65 +0.4 2,588,874 - Dshi_2445 0.80 -0.8 2,588,961 + -0.8 2,588,994 - +1.4 2,589,011 - -0.6 2,589,040 - -1.3 2,589,094 + -0.8 2,589,144 + Dshi_2446 0.14 -0.4 2,589,252 - Dshi_2446 0.26 -0.8 2,589,265 + Dshi_2446 0.27 -0.3 2,589,273 - Dshi_2446 0.28 -1.3 2,589,273 - Dshi_2446 0.28 -3.6 2,589,273 - Dshi_2446 0.28 -1.6 2,589,273 - Dshi_2446 0.28 -0.7 2,589,424 - Dshi_2446 0.45 +0.6 2,589,430 + Dshi_2446 0.46 -1.9 2,589,440 + Dshi_2446 0.47 -1.0 2,589,718 + Dshi_2446 0.77 -1.1 2,589,741 + Dshi_2446 0.80 -1.6 2,589,749 - Dshi_2446 0.80 -1.9 2,589,779 + Dshi_2446 0.84 +0.1 2,589,808 - Dshi_2446 0.87 -0.3 2,589,812 - Dshi_2446 0.87 -2.6 2,589,876 - -0.0 2,589,901 + +1.0 2,589,994 - -0.1 2,590,114 - Dshi_2447 0.16 +1.7 2,590,116 - Dshi_2447 0.16 -1.6 2,590,126 - Dshi_2447 0.17 -0.4 2,590,171 - Dshi_2447 0.21 -1.1 2,590,181 - Dshi_2447 0.22 +0.2 2,590,181 - Dshi_2447 0.22 -1.2 2,590,185 + Dshi_2447 0.22 +0.8 2,590,251 + Dshi_2447 0.28 +1.2 2,590,275 - Dshi_2447 0.30 -0.9 2,590,293 - Dshi_2447 0.31 +0.2 2,590,337 - Dshi_2447 0.35 -3.3 2,590,344 - Dshi_2447 0.36 +0.2 2,590,375 + Dshi_2447 0.38 +1.6 2,590,397 - Dshi_2447 0.40 +2.0 2,590,466 - Dshi_2447 0.46 -2.3 2,590,478 + Dshi_2447 0.47 -1.1 2,590,478 + Dshi_2447 0.47 -1.9 2,590,505 - Dshi_2447 0.49 -0.8 2,590,506 + Dshi_2447 0.50 -2.3 2,590,506 + Dshi_2447 0.50 -0.9 2,590,538 + Dshi_2447 0.52 +0.4 2,590,610 - Dshi_2447 0.58 +0.2 2,590,613 + Dshi_2447 0.59 -2.8 2,590,644 + Dshi_2447 0.61 +0.0 2,590,646 + Dshi_2447 0.61 +0.7 2,590,673 - Dshi_2447 0.64 -1.7 2,590,791 - Dshi_2447 0.74 -0.5
Or see this region's nucleotide sequence