Experiment: m.b. A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2353 and Dshi_2354 are separated by 88 nucleotides Dshi_2354 and Dshi_2355 are separated by 10 nucleotides
Dshi_2353: Dshi_2353 - protein of unknown function DUF1501 (RefSeq), at 2,486,413 to 2,487,582
_2353
Dshi_2354: Dshi_2354 - major facilitator superfamily MFS_1 (RefSeq), at 2,487,671 to 2,488,822
_2354
Dshi_2355: Dshi_2355 - VWA containing CoxE family protein (RefSeq), at 2,488,833 to 2,490,095
_2355
Position (kb)
2487
2488
2489 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2486.683 kb on - strand, within Dshi_2353 at 2486.805 kb on - strand, within Dshi_2353 at 2487.044 kb on + strand, within Dshi_2353 at 2487.381 kb on + strand, within Dshi_2353 at 2487.432 kb on + strand, within Dshi_2353 at 2487.461 kb on - strand, within Dshi_2353 at 2487.563 kb on + strand at 2487.793 kb on - strand, within Dshi_2354 at 2487.881 kb on - strand, within Dshi_2354 at 2487.922 kb on - strand, within Dshi_2354 at 2488.040 kb on + strand, within Dshi_2354 at 2488.189 kb on - strand, within Dshi_2354 at 2488.496 kb on + strand, within Dshi_2354 at 2488.562 kb on + strand, within Dshi_2354 at 2488.631 kb on - strand, within Dshi_2354 at 2488.638 kb on + strand, within Dshi_2354 at 2488.638 kb on + strand, within Dshi_2354 at 2488.684 kb on - strand, within Dshi_2354 at 2488.709 kb on + strand at 2488.756 kb on + strand at 2488.801 kb on + strand at 2488.824 kb on - strand at 2489.210 kb on - strand, within Dshi_2355 at 2489.269 kb on + strand, within Dshi_2355 at 2489.287 kb on + strand, within Dshi_2355 at 2489.314 kb on - strand, within Dshi_2355 at 2489.318 kb on - strand, within Dshi_2355 at 2489.323 kb on + strand, within Dshi_2355 at 2489.532 kb on - strand, within Dshi_2355 at 2489.602 kb on + strand, within Dshi_2355 at 2489.767 kb on + strand, within Dshi_2355
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.02 mg/ml remove 2,486,683 - Dshi_2353 0.23 -1.3 2,486,805 - Dshi_2353 0.34 -3.1 2,487,044 + Dshi_2353 0.54 +0.2 2,487,381 + Dshi_2353 0.83 -2.6 2,487,432 + Dshi_2353 0.87 -1.1 2,487,461 - Dshi_2353 0.90 -2.1 2,487,563 + -2.1 2,487,793 - Dshi_2354 0.11 -1.0 2,487,881 - Dshi_2354 0.18 -1.4 2,487,922 - Dshi_2354 0.22 -2.1 2,488,040 + Dshi_2354 0.32 -0.5 2,488,189 - Dshi_2354 0.45 +0.6 2,488,496 + Dshi_2354 0.72 +2.6 2,488,562 + Dshi_2354 0.77 -1.4 2,488,631 - Dshi_2354 0.83 -1.8 2,488,638 + Dshi_2354 0.84 -1.1 2,488,638 + Dshi_2354 0.84 -1.0 2,488,684 - Dshi_2354 0.88 -2.4 2,488,709 + +1.8 2,488,756 + -0.9 2,488,801 + -0.6 2,488,824 - +0.2 2,489,210 - Dshi_2355 0.30 +3.0 2,489,269 + Dshi_2355 0.35 -0.4 2,489,287 + Dshi_2355 0.36 +0.2 2,489,314 - Dshi_2355 0.38 -0.7 2,489,318 - Dshi_2355 0.38 +1.8 2,489,323 + Dshi_2355 0.39 +2.0 2,489,532 - Dshi_2355 0.55 -1.1 2,489,602 + Dshi_2355 0.61 +2.3 2,489,767 + Dshi_2355 0.74 +0.2
Or see this region's nucleotide sequence