Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2292

Experiment: m.b. A22 0.02 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2290 and Dshi_2291 are separated by 33 nucleotidesDshi_2291 and Dshi_2292 are separated by 143 nucleotidesDshi_2292 and Dshi_2293 are separated by 10 nucleotides Dshi_2290: Dshi_2290 - Carbohydrate-selective porin OprB (RefSeq), at 2,419,657 to 2,420,955 _2290 Dshi_2291: Dshi_2291 - protein of unknown function DUF306 Meta and HslJ (RefSeq), at 2,420,989 to 2,421,627 _2291 Dshi_2292: Dshi_2292 - hypothetical protein (RefSeq), at 2,421,771 to 2,422,820 _2292 Dshi_2293: Dshi_2293 - secretion protein HlyD family protein (RefSeq), at 2,422,831 to 2,423,928 _2293 Position (kb) 2421 2422 2423Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 2420.824 kb on - strand, within Dshi_2290at 2420.902 kb on - strandat 2420.903 kb on - strandat 2420.928 kb on - strandat 2421.123 kb on + strand, within Dshi_2291at 2421.128 kb on + strand, within Dshi_2291at 2421.128 kb on + strand, within Dshi_2291at 2421.128 kb on + strand, within Dshi_2291at 2421.128 kb on + strand, within Dshi_2291at 2421.136 kb on - strand, within Dshi_2291at 2421.449 kb on - strand, within Dshi_2291at 2421.552 kb on - strand, within Dshi_2291at 2421.554 kb on + strand, within Dshi_2291at 2421.554 kb on + strand, within Dshi_2291at 2421.622 kb on + strandat 2421.622 kb on - strandat 2421.630 kb on - strandat 2421.637 kb on + strandat 2421.659 kb on - strandat 2421.671 kb on + strandat 2421.679 kb on - strandat 2421.679 kb on - strandat 2421.696 kb on - strandat 2421.856 kb on + strandat 2421.893 kb on - strand, within Dshi_2292at 2421.908 kb on - strand, within Dshi_2292at 2421.940 kb on + strand, within Dshi_2292at 2422.011 kb on + strand, within Dshi_2292at 2422.036 kb on + strand, within Dshi_2292at 2422.065 kb on - strand, within Dshi_2292at 2422.113 kb on + strand, within Dshi_2292at 2422.296 kb on + strand, within Dshi_2292at 2422.359 kb on + strand, within Dshi_2292at 2422.367 kb on - strand, within Dshi_2292at 2422.487 kb on - strand, within Dshi_2292at 2422.508 kb on + strand, within Dshi_2292at 2422.570 kb on + strand, within Dshi_2292at 2422.662 kb on + strand, within Dshi_2292at 2422.760 kb on + strandat 2422.760 kb on + strandat 2422.774 kb on - strandat 2422.837 kb on - strandat 2423.048 kb on - strand, within Dshi_2293at 2423.090 kb on + strand, within Dshi_2293at 2423.090 kb on + strand, within Dshi_2293at 2423.090 kb on + strand, within Dshi_2293at 2423.098 kb on - strand, within Dshi_2293at 2423.135 kb on - strand, within Dshi_2293at 2423.232 kb on - strand, within Dshi_2293at 2423.259 kb on + strand, within Dshi_2293at 2423.285 kb on + strand, within Dshi_2293at 2423.346 kb on - strand, within Dshi_2293at 2423.374 kb on - strand, within Dshi_2293at 2423.437 kb on - strand, within Dshi_2293at 2423.568 kb on - strand, within Dshi_2293at 2423.646 kb on - strand, within Dshi_2293at 2423.678 kb on - strand, within Dshi_2293at 2423.726 kb on + strand, within Dshi_2293at 2423.774 kb on + strand, within Dshi_2293at 2423.784 kb on + strand, within Dshi_2293at 2423.792 kb on - strand, within Dshi_2293at 2423.807 kb on - strand, within Dshi_2293

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.02 mg/ml
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2,420,824 - Dshi_2290 0.90 +1.1
2,420,902 - -0.1
2,420,903 - +0.4
2,420,928 - -1.1
2,421,123 + Dshi_2291 0.21 -0.3
2,421,128 + Dshi_2291 0.22 -0.6
2,421,128 + Dshi_2291 0.22 +0.9
2,421,128 + Dshi_2291 0.22 -0.4
2,421,128 + Dshi_2291 0.22 +0.2
2,421,136 - Dshi_2291 0.23 -0.8
2,421,449 - Dshi_2291 0.72 -0.8
2,421,552 - Dshi_2291 0.88 +0.0
2,421,554 + Dshi_2291 0.88 -0.5
2,421,554 + Dshi_2291 0.88 +0.0
2,421,622 + -0.3
2,421,622 - +0.0
2,421,630 - +0.1
2,421,637 + +0.6
2,421,659 - -0.1
2,421,671 + +1.1
2,421,679 - -0.4
2,421,679 - +0.7
2,421,696 - -3.1
2,421,856 + -0.7
2,421,893 - Dshi_2292 0.12 +0.4
2,421,908 - Dshi_2292 0.13 -1.4
2,421,940 + Dshi_2292 0.16 +1.2
2,422,011 + Dshi_2292 0.23 -2.3
2,422,036 + Dshi_2292 0.25 +1.2
2,422,065 - Dshi_2292 0.28 +0.5
2,422,113 + Dshi_2292 0.33 +0.6
2,422,296 + Dshi_2292 0.50 -0.6
2,422,359 + Dshi_2292 0.56 -1.2
2,422,367 - Dshi_2292 0.57 +0.8
2,422,487 - Dshi_2292 0.68 -0.3
2,422,508 + Dshi_2292 0.70 +0.1
2,422,570 + Dshi_2292 0.76 +2.1
2,422,662 + Dshi_2292 0.85 -0.1
2,422,760 + +1.2
2,422,760 + +0.1
2,422,774 - -0.1
2,422,837 - -0.3
2,423,048 - Dshi_2293 0.20 -0.6
2,423,090 + Dshi_2293 0.24 +0.2
2,423,090 + Dshi_2293 0.24 +0.4
2,423,090 + Dshi_2293 0.24 +1.1
2,423,098 - Dshi_2293 0.24 +0.7
2,423,135 - Dshi_2293 0.28 +0.5
2,423,232 - Dshi_2293 0.37 -1.1
2,423,259 + Dshi_2293 0.39 -0.0
2,423,285 + Dshi_2293 0.41 +5.1
2,423,346 - Dshi_2293 0.47 -1.0
2,423,374 - Dshi_2293 0.49 -0.6
2,423,437 - Dshi_2293 0.55 -0.9
2,423,568 - Dshi_2293 0.67 -0.8
2,423,646 - Dshi_2293 0.74 -0.5
2,423,678 - Dshi_2293 0.77 -0.2
2,423,726 + Dshi_2293 0.82 +2.7
2,423,774 + Dshi_2293 0.86 -1.1
2,423,784 + Dshi_2293 0.87 -0.1
2,423,792 - Dshi_2293 0.88 -0.6
2,423,807 - Dshi_2293 0.89 +0.3

Or see this region's nucleotide sequence