Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2052
Experiment: m.b. A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | m.b. A22 0.02 mg/ml |
---|---|---|---|---|---|
remove | |||||
2,171,073 | - | Dshi_2050 | 0.66 | -0.8 | |
2,171,119 | - | Dshi_2050 | 0.70 | -0.2 | |
2,171,240 | + | Dshi_2050 | 0.81 | -0.3 | |
2,171,272 | - | Dshi_2050 | 0.83 | +3.4 | |
2,171,274 | + | Dshi_2050 | 0.84 | +1.6 | |
2,171,479 | - | +0.4 | |||
2,171,479 | - | +1.7 | |||
2,171,503 | - | +0.3 | |||
2,171,508 | - | -1.1 | |||
2,171,532 | - | -0.1 | |||
2,171,541 | + | -1.2 | |||
2,171,549 | - | +0.1 | |||
2,171,739 | - | Dshi_2051 | 0.36 | +0.2 | |
2,171,762 | + | Dshi_2051 | 0.40 | +1.0 | |
2,171,775 | - | Dshi_2051 | 0.43 | -1.2 | |
2,171,798 | + | Dshi_2051 | 0.48 | -0.5 | |
2,171,802 | - | Dshi_2051 | 0.49 | +0.8 | |
2,171,843 | - | Dshi_2051 | 0.57 | +1.0 | |
2,171,863 | + | Dshi_2051 | 0.62 | +3.6 | |
2,171,889 | + | Dshi_2051 | 0.67 | -0.5 | |
2,171,891 | - | Dshi_2051 | 0.68 | +2.6 | |
2,171,912 | + | Dshi_2051 | 0.72 | +3.4 | |
2,172,085 | + | Dshi_2052 | 0.26 | -0.8 | |
2,172,103 | + | Dshi_2052 | 0.37 | -2.5 | |
2,172,204 | - | -1.1 | |||
2,172,211 | - | -2.8 | |||
2,172,262 | + | -0.9 | |||
2,172,317 | + | +1.7 | |||
2,172,335 | - | -2.9 | |||
2,172,368 | - | +0.5 | |||
2,172,483 | - | -0.3 | |||
2,172,542 | + | -0.4 | |||
2,172,544 | + | -0.1 |
Or see this region's nucleotide sequence