Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2050

Experiment: m.b. A22 0.02 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDshi_2048 and Dshi_2049 are separated by 21 nucleotidesDshi_2049 and Dshi_2050 overlap by 1 nucleotidesDshi_2050 and Dshi_2051 are separated by 105 nucleotidesDshi_2051 and Dshi_2052 overlap by 4 nucleotides Dshi_2048: Dshi_2048 - Mammalian cell entry related domain protein (RefSeq), at 2,167,769 to 2,169,508 _2048 Dshi_2049: Dshi_2049 - ABC transporter related (RefSeq), at 2,169,530 to 2,170,309 _2049 Dshi_2050: Dshi_2050 - protein of unknown function DUF140 (RefSeq), at 2,170,309 to 2,171,463 _2050 Dshi_2051: Dshi_2051 - hypothetical protein (RefSeq), at 2,171,569 to 2,172,045 _2051 Dshi_2052: Dshi_2052 - hypothetical protein (RefSeq), at 2,172,042 to 2,172,206 _2052 Position (kb) 2170 2171 2172Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2169.356 kb on + strandat 2169.370 kb on - strandat 2169.409 kb on - strandat 2169.411 kb on + strandat 2169.419 kb on - strandat 2169.419 kb on - strandat 2169.563 kb on - strandat 2169.596 kb on - strandat 2169.624 kb on - strand, within Dshi_2049at 2169.687 kb on + strand, within Dshi_2049at 2169.717 kb on - strand, within Dshi_2049at 2169.749 kb on - strand, within Dshi_2049at 2169.870 kb on - strand, within Dshi_2049at 2169.958 kb on + strand, within Dshi_2049at 2169.980 kb on + strand, within Dshi_2049at 2169.980 kb on + strand, within Dshi_2049at 2169.988 kb on - strand, within Dshi_2049at 2170.014 kb on - strand, within Dshi_2049at 2170.093 kb on + strand, within Dshi_2049at 2170.204 kb on - strand, within Dshi_2049at 2170.386 kb on - strandat 2170.433 kb on - strand, within Dshi_2050at 2170.457 kb on + strand, within Dshi_2050at 2170.490 kb on + strand, within Dshi_2050at 2170.490 kb on + strand, within Dshi_2050at 2170.591 kb on - strand, within Dshi_2050at 2170.636 kb on + strand, within Dshi_2050at 2170.758 kb on - strand, within Dshi_2050at 2170.793 kb on + strand, within Dshi_2050at 2170.924 kb on + strand, within Dshi_2050at 2170.931 kb on + strand, within Dshi_2050at 2170.931 kb on + strand, within Dshi_2050at 2171.007 kb on - strand, within Dshi_2050at 2171.017 kb on - strand, within Dshi_2050at 2171.017 kb on - strand, within Dshi_2050at 2171.073 kb on - strand, within Dshi_2050at 2171.119 kb on - strand, within Dshi_2050at 2171.240 kb on + strand, within Dshi_2050at 2171.272 kb on - strand, within Dshi_2050at 2171.274 kb on + strand, within Dshi_2050at 2171.479 kb on - strandat 2171.479 kb on - strandat 2171.503 kb on - strandat 2171.508 kb on - strandat 2171.532 kb on - strandat 2171.541 kb on + strandat 2171.549 kb on - strandat 2171.739 kb on - strand, within Dshi_2051at 2171.762 kb on + strand, within Dshi_2051at 2171.775 kb on - strand, within Dshi_2051at 2171.798 kb on + strand, within Dshi_2051at 2171.802 kb on - strand, within Dshi_2051at 2171.843 kb on - strand, within Dshi_2051at 2171.863 kb on + strand, within Dshi_2051at 2171.889 kb on + strand, within Dshi_2051at 2171.891 kb on - strand, within Dshi_2051at 2171.912 kb on + strand, within Dshi_2051at 2172.085 kb on + strand, within Dshi_2052at 2172.103 kb on + strand, within Dshi_2052at 2172.204 kb on - strandat 2172.211 kb on - strandat 2172.262 kb on + strandat 2172.317 kb on + strandat 2172.335 kb on - strandat 2172.368 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.02 mg/ml
remove
2,169,356 + -3.5
2,169,370 - -0.3
2,169,409 - -0.9
2,169,411 + -1.9
2,169,419 - +0.3
2,169,419 - -0.0
2,169,563 - +0.4
2,169,596 - +0.4
2,169,624 - Dshi_2049 0.12 -3.5
2,169,687 + Dshi_2049 0.20 -1.2
2,169,717 - Dshi_2049 0.24 +0.4
2,169,749 - Dshi_2049 0.28 -0.9
2,169,870 - Dshi_2049 0.44 +2.0
2,169,958 + Dshi_2049 0.55 +0.4
2,169,980 + Dshi_2049 0.58 -1.6
2,169,980 + Dshi_2049 0.58 +1.4
2,169,988 - Dshi_2049 0.59 +0.6
2,170,014 - Dshi_2049 0.62 -1.4
2,170,093 + Dshi_2049 0.72 -0.3
2,170,204 - Dshi_2049 0.86 +2.7
2,170,386 - -2.8
2,170,433 - Dshi_2050 0.11 +0.4
2,170,457 + Dshi_2050 0.13 +0.2
2,170,490 + Dshi_2050 0.16 -0.6
2,170,490 + Dshi_2050 0.16 +0.4
2,170,591 - Dshi_2050 0.24 -0.3
2,170,636 + Dshi_2050 0.28 +0.4
2,170,758 - Dshi_2050 0.39 -1.1
2,170,793 + Dshi_2050 0.42 +0.4
2,170,924 + Dshi_2050 0.53 -0.1
2,170,931 + Dshi_2050 0.54 -3.7
2,170,931 + Dshi_2050 0.54 +2.7
2,171,007 - Dshi_2050 0.60 -1.1
2,171,017 - Dshi_2050 0.61 -0.1
2,171,017 - Dshi_2050 0.61 -0.4
2,171,073 - Dshi_2050 0.66 -0.8
2,171,119 - Dshi_2050 0.70 -0.2
2,171,240 + Dshi_2050 0.81 -0.3
2,171,272 - Dshi_2050 0.83 +3.4
2,171,274 + Dshi_2050 0.84 +1.6
2,171,479 - +0.4
2,171,479 - +1.7
2,171,503 - +0.3
2,171,508 - -1.1
2,171,532 - -0.1
2,171,541 + -1.2
2,171,549 - +0.1
2,171,739 - Dshi_2051 0.36 +0.2
2,171,762 + Dshi_2051 0.40 +1.0
2,171,775 - Dshi_2051 0.43 -1.2
2,171,798 + Dshi_2051 0.48 -0.5
2,171,802 - Dshi_2051 0.49 +0.8
2,171,843 - Dshi_2051 0.57 +1.0
2,171,863 + Dshi_2051 0.62 +3.6
2,171,889 + Dshi_2051 0.67 -0.5
2,171,891 - Dshi_2051 0.68 +2.6
2,171,912 + Dshi_2051 0.72 +3.4
2,172,085 + Dshi_2052 0.26 -0.8
2,172,103 + Dshi_2052 0.37 -2.5
2,172,204 - -1.1
2,172,211 - -2.8
2,172,262 + -0.9
2,172,317 + +1.7
2,172,335 - -2.9
2,172,368 - +0.5

Or see this region's nucleotide sequence