Experiment: m.b. A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2010 and Dshi_2011 overlap by 4 nucleotides Dshi_2011 and Dshi_2012 overlap by 1 nucleotides Dshi_2012 and Dshi_2013 overlap by 4 nucleotides Dshi_2013 and Dshi_2014 are separated by 76 nucleotides
Dshi_2010: Dshi_2010 - phosphonate ABC transporter, ATPase subunit (RefSeq), at 2,129,686 to 2,130,483
_2010
Dshi_2011: Dshi_2011 - phosphonate ABC transporter, inner membrane subunit (RefSeq), at 2,130,480 to 2,131,292
_2011
Dshi_2012: Dshi_2012 - phosphonate ABC transporter, inner membrane subunit (RefSeq), at 2,131,292 to 2,132,107
_2012
Dshi_2013: Dshi_2013 - Haloacid dehalogenase domain protein hydrolase (RefSeq), at 2,132,104 to 2,133,009
_2013
Dshi_2014: Dshi_2014 - extracellular solute-binding protein family 1 (RefSeq), at 2,133,086 to 2,134,387
_2014
Position (kb)
2131
2132
2133 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2130.337 kb on + strand, within Dshi_2010 at 2130.358 kb on + strand, within Dshi_2010 at 2130.499 kb on - strand at 2130.666 kb on + strand, within Dshi_2011 at 2130.753 kb on + strand, within Dshi_2011 at 2130.802 kb on + strand, within Dshi_2011 at 2131.059 kb on + strand, within Dshi_2011 at 2131.097 kb on - strand, within Dshi_2011 at 2131.178 kb on - strand, within Dshi_2011 at 2131.308 kb on + strand at 2131.413 kb on + strand, within Dshi_2012 at 2132.179 kb on - strand at 2132.313 kb on + strand, within Dshi_2013 at 2132.486 kb on - strand, within Dshi_2013 at 2132.585 kb on - strand, within Dshi_2013 at 2132.728 kb on - strand, within Dshi_2013 at 2132.745 kb on - strand, within Dshi_2013 at 2132.749 kb on - strand, within Dshi_2013 at 2132.785 kb on + strand, within Dshi_2013 at 2132.828 kb on - strand, within Dshi_2013 at 2132.892 kb on + strand, within Dshi_2013 at 2132.892 kb on + strand, within Dshi_2013 at 2132.902 kb on - strand, within Dshi_2013 at 2132.911 kb on + strand, within Dshi_2013 at 2132.931 kb on - strand at 2132.955 kb on + strand at 2133.042 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.02 mg/ml remove 2,130,337 + Dshi_2010 0.82 -0.4 2,130,358 + Dshi_2010 0.84 +2.0 2,130,499 - -0.4 2,130,666 + Dshi_2011 0.23 -0.3 2,130,753 + Dshi_2011 0.34 -0.8 2,130,802 + Dshi_2011 0.40 -1.6 2,131,059 + Dshi_2011 0.71 -0.6 2,131,097 - Dshi_2011 0.76 +0.8 2,131,178 - Dshi_2011 0.86 -0.3 2,131,308 + -1.9 2,131,413 + Dshi_2012 0.15 -0.2 2,132,179 - +0.4 2,132,313 + Dshi_2013 0.23 +2.0 2,132,486 - Dshi_2013 0.42 +0.5 2,132,585 - Dshi_2013 0.53 -0.5 2,132,728 - Dshi_2013 0.69 -0.4 2,132,745 - Dshi_2013 0.71 -0.4 2,132,749 - Dshi_2013 0.71 -1.8 2,132,785 + Dshi_2013 0.75 +2.0 2,132,828 - Dshi_2013 0.80 +0.3 2,132,892 + Dshi_2013 0.87 -0.5 2,132,892 + Dshi_2013 0.87 -0.3 2,132,902 - Dshi_2013 0.88 +0.4 2,132,911 + Dshi_2013 0.89 -0.8 2,132,931 - -2.2 2,132,955 + +1.4 2,133,042 + -1.0
Or see this region's nucleotide sequence