Experiment: m.b. A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1937 and Dshi_1938 are separated by 116 nucleotides Dshi_1938 and Dshi_1939 are separated by 116 nucleotides Dshi_1939 and Dshi_1940 are separated by 39 nucleotides
Dshi_1937: Dshi_1937 - protein of unknown function DUF463 YcjX family protein (RefSeq), at 2,025,991 to 2,027,403
_1937
Dshi_1938: Dshi_1938 - tRNA pseudouridine synthase A (RefSeq), at 2,027,520 to 2,028,293
_1938
Dshi_1939: Dshi_1939 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 2,028,410 to 2,029,231
_1939
Dshi_1940: Dshi_1940 - ABC transporter related (RefSeq), at 2,029,271 to 2,030,071
_1940
Position (kb)
2027
2028
2029 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2026.617 kb on - strand, within Dshi_1937 at 2026.642 kb on - strand, within Dshi_1937 at 2026.677 kb on + strand, within Dshi_1937 at 2026.757 kb on - strand, within Dshi_1937 at 2027.290 kb on + strand at 2027.298 kb on - strand at 2027.358 kb on - strand at 2027.358 kb on - strand at 2027.358 kb on - strand at 2027.439 kb on - strand at 2027.504 kb on + strand at 2027.515 kb on + strand at 2027.701 kb on - strand, within Dshi_1938 at 2027.752 kb on - strand, within Dshi_1938 at 2027.854 kb on - strand, within Dshi_1938 at 2028.580 kb on - strand, within Dshi_1939 at 2028.596 kb on - strand, within Dshi_1939 at 2028.678 kb on + strand, within Dshi_1939 at 2028.866 kb on - strand, within Dshi_1939 at 2028.966 kb on - strand, within Dshi_1939 at 2028.985 kb on - strand, within Dshi_1939 at 2029.024 kb on + strand, within Dshi_1939 at 2029.107 kb on - strand, within Dshi_1939 at 2029.148 kb on + strand, within Dshi_1939 at 2029.154 kb on - strand at 2029.173 kb on - strand at 2029.212 kb on + strand at 2029.261 kb on + strand at 2029.281 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.02 mg/ml remove 2,026,617 - Dshi_1937 0.44 +2.0 2,026,642 - Dshi_1937 0.46 +1.4 2,026,677 + Dshi_1937 0.49 +2.2 2,026,757 - Dshi_1937 0.54 +2.4 2,027,290 + +0.8 2,027,298 - -1.4 2,027,358 - +0.4 2,027,358 - +0.8 2,027,358 - -1.2 2,027,439 - -0.6 2,027,504 + -0.9 2,027,515 + +0.8 2,027,701 - Dshi_1938 0.23 -0.4 2,027,752 - Dshi_1938 0.30 -0.3 2,027,854 - Dshi_1938 0.43 -0.4 2,028,580 - Dshi_1939 0.21 +0.1 2,028,596 - Dshi_1939 0.23 -0.4 2,028,678 + Dshi_1939 0.33 -1.6 2,028,866 - Dshi_1939 0.55 +1.2 2,028,966 - Dshi_1939 0.68 -0.6 2,028,985 - Dshi_1939 0.70 +1.2 2,029,024 + Dshi_1939 0.75 -2.0 2,029,107 - Dshi_1939 0.85 +0.1 2,029,148 + Dshi_1939 0.90 +2.0 2,029,154 - +0.4 2,029,173 - +1.7 2,029,212 + -0.6 2,029,261 + -2.9 2,029,281 + +0.1
Or see this region's nucleotide sequence