Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1934

Experiment: m.b. A22 0.02 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1933 and Dshi_1934 are separated by 351 nucleotidesDshi_1934 and Dshi_1935 are separated by 28 nucleotides Dshi_1933: Dshi_1933 - isoleucyl-tRNA synthetase (RefSeq), at 2,019,318 to 2,022,293 _1933 Dshi_1934: Dshi_1934 - hypothetical protein (RefSeq), at 2,022,645 to 2,023,316 _1934 Dshi_1935: Dshi_1935 - cyclic nucleotide-regulated FAD-dependent pyridine nucleotide-disulphide oxidoreductase (RefSeq), at 2,023,345 to 2,024,964 _1935 Position (kb) 2022 2023 2024Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 2022.463 kb on + strandat 2022.471 kb on - strandat 2022.471 kb on - strandat 2022.481 kb on - strandat 2022.575 kb on - strandat 2022.579 kb on + strandat 2022.580 kb on + strandat 2022.583 kb on - strandat 2022.588 kb on - strandat 2022.599 kb on - strandat 2022.655 kb on + strandat 2022.673 kb on - strandat 2022.676 kb on + strandat 2022.681 kb on + strandat 2022.682 kb on + strandat 2022.682 kb on + strandat 2022.682 kb on + strandat 2022.682 kb on + strandat 2022.682 kb on + strandat 2022.687 kb on + strandat 2022.689 kb on - strandat 2022.689 kb on - strandat 2022.690 kb on - strandat 2022.690 kb on - strandat 2022.690 kb on - strandat 2022.690 kb on - strandat 2022.690 kb on - strandat 2022.692 kb on + strandat 2022.692 kb on + strandat 2022.692 kb on + strandat 2022.692 kb on + strandat 2022.692 kb on + strandat 2022.692 kb on + strandat 2022.695 kb on - strandat 2022.700 kb on - strandat 2022.700 kb on - strandat 2022.700 kb on - strandat 2022.700 kb on - strandat 2022.700 kb on - strandat 2022.700 kb on - strandat 2022.700 kb on - strandat 2022.702 kb on + strandat 2022.702 kb on + strandat 2022.702 kb on + strandat 2022.702 kb on + strandat 2022.710 kb on - strandat 2022.710 kb on - strandat 2022.713 kb on - strand, within Dshi_1934at 2022.714 kb on + strand, within Dshi_1934at 2022.715 kb on - strand, within Dshi_1934at 2022.722 kb on - strand, within Dshi_1934at 2022.723 kb on - strand, within Dshi_1934at 2022.769 kb on - strand, within Dshi_1934at 2022.816 kb on + strand, within Dshi_1934at 2022.816 kb on + strand, within Dshi_1934at 2022.816 kb on - strand, within Dshi_1934at 2022.831 kb on + strand, within Dshi_1934at 2022.839 kb on + strand, within Dshi_1934at 2022.839 kb on + strand, within Dshi_1934at 2022.839 kb on + strand, within Dshi_1934at 2022.839 kb on + strand, within Dshi_1934at 2022.847 kb on - strand, within Dshi_1934at 2022.847 kb on - strand, within Dshi_1934at 2022.854 kb on - strand, within Dshi_1934at 2022.884 kb on - strand, within Dshi_1934at 2022.916 kb on + strand, within Dshi_1934at 2022.919 kb on + strand, within Dshi_1934at 2022.952 kb on + strand, within Dshi_1934at 2022.967 kb on - strand, within Dshi_1934at 2022.998 kb on + strand, within Dshi_1934at 2023.034 kb on - strand, within Dshi_1934at 2023.126 kb on + strand, within Dshi_1934at 2023.340 kb on - strandat 2023.576 kb on - strand, within Dshi_1935at 2023.604 kb on + strand, within Dshi_1935at 2023.604 kb on + strand, within Dshi_1935at 2023.604 kb on + strand, within Dshi_1935at 2023.612 kb on - strand, within Dshi_1935at 2023.635 kb on - strand, within Dshi_1935at 2023.658 kb on + strand, within Dshi_1935at 2023.661 kb on - strand, within Dshi_1935at 2023.697 kb on - strand, within Dshi_1935at 2023.793 kb on - strand, within Dshi_1935at 2023.897 kb on + strand, within Dshi_1935at 2023.897 kb on + strand, within Dshi_1935at 2023.905 kb on - strand, within Dshi_1935at 2023.905 kb on - strand, within Dshi_1935at 2023.934 kb on - strand, within Dshi_1935at 2024.152 kb on + strand, within Dshi_1935at 2024.310 kb on - strand, within Dshi_1935

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.02 mg/ml
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2,022,463 + -0.3
2,022,471 - -0.6
2,022,471 - -0.3
2,022,481 - -3.1
2,022,575 - -0.9
2,022,579 + -2.6
2,022,580 + -1.9
2,022,583 - +1.2
2,022,588 - -0.2
2,022,599 - +2.4
2,022,655 + -0.3
2,022,673 - +2.4
2,022,676 + -0.6
2,022,681 + +2.1
2,022,682 + +1.8
2,022,682 + +3.9
2,022,682 + +1.1
2,022,682 + +2.0
2,022,682 + -0.6
2,022,687 + -1.2
2,022,689 - +0.2
2,022,689 - +1.6
2,022,690 - -2.6
2,022,690 - -1.5
2,022,690 - +0.3
2,022,690 - -3.2
2,022,690 - -1.1
2,022,692 + +0.4
2,022,692 + -1.6
2,022,692 + +0.4
2,022,692 + +1.4
2,022,692 + -0.1
2,022,692 + +0.4
2,022,695 - +2.1
2,022,700 - -1.9
2,022,700 - +0.1
2,022,700 - +0.6
2,022,700 - -0.8
2,022,700 - +1.0
2,022,700 - -1.5
2,022,700 - +0.4
2,022,702 + +2.0
2,022,702 + -0.4
2,022,702 + -1.5
2,022,702 + -1.2
2,022,710 - -2.9
2,022,710 - +0.8
2,022,713 - Dshi_1934 0.10 +1.4
2,022,714 + Dshi_1934 0.10 +0.7
2,022,715 - Dshi_1934 0.10 -2.8
2,022,722 - Dshi_1934 0.11 -0.2
2,022,723 - Dshi_1934 0.12 -1.3
2,022,769 - Dshi_1934 0.18 +0.0
2,022,816 + Dshi_1934 0.25 +0.4
2,022,816 + Dshi_1934 0.25 +0.3
2,022,816 - Dshi_1934 0.25 +0.7
2,022,831 + Dshi_1934 0.28 -2.2
2,022,839 + Dshi_1934 0.29 +0.8
2,022,839 + Dshi_1934 0.29 -0.9
2,022,839 + Dshi_1934 0.29 -0.3
2,022,839 + Dshi_1934 0.29 +1.3
2,022,847 - Dshi_1934 0.30 -0.6
2,022,847 - Dshi_1934 0.30 -1.9
2,022,854 - Dshi_1934 0.31 -1.8
2,022,884 - Dshi_1934 0.36 +2.4
2,022,916 + Dshi_1934 0.40 +2.4
2,022,919 + Dshi_1934 0.41 +1.0
2,022,952 + Dshi_1934 0.46 -1.8
2,022,967 - Dshi_1934 0.48 +0.8
2,022,998 + Dshi_1934 0.53 +1.0
2,023,034 - Dshi_1934 0.58 +0.3
2,023,126 + Dshi_1934 0.72 -0.6
2,023,340 - -0.3
2,023,576 - Dshi_1935 0.14 +0.4
2,023,604 + Dshi_1935 0.16 +0.4
2,023,604 + Dshi_1935 0.16 +2.4
2,023,604 + Dshi_1935 0.16 -3.2
2,023,612 - Dshi_1935 0.16 +0.2
2,023,635 - Dshi_1935 0.18 -0.3
2,023,658 + Dshi_1935 0.19 -2.9
2,023,661 - Dshi_1935 0.20 -0.3
2,023,697 - Dshi_1935 0.22 -0.4
2,023,793 - Dshi_1935 0.28 -2.3
2,023,897 + Dshi_1935 0.34 -3.2
2,023,897 + Dshi_1935 0.34 +1.9
2,023,905 - Dshi_1935 0.35 +0.2
2,023,905 - Dshi_1935 0.35 -0.2
2,023,934 - Dshi_1935 0.36 +0.1
2,024,152 + Dshi_1935 0.50 -0.2
2,024,310 - Dshi_1935 0.60 +1.1

Or see this region's nucleotide sequence