Experiment: m.b. A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1883 and Dshi_1884 are separated by 129 nucleotides Dshi_1884 and Dshi_1885 are separated by 132 nucleotides Dshi_1885 and Dshi_1886 are separated by 7 nucleotides Dshi_1886 and Dshi_1887 are separated by 204 nucleotides
Dshi_1883: Dshi_1883 - AAA ATPase central domain protein (RefSeq), at 1,960,643 to 1,961,485
_1883
Dshi_1884: Dshi_1884 - transcriptional regulator, TraR/DksA family (RefSeq), at 1,961,615 to 1,962,088
_1884
Dshi_1885: Dshi_1885 - monooxygenase FAD-binding (RefSeq), at 1,962,221 to 1,963,390
_1885
Dshi_1886: Dshi_1886 - exodeoxyribonuclease III Xth (RefSeq), at 1,963,398 to 1,964,177
_1886
Dshi_1887: Dshi_1887 - ribonuclease D (RefSeq), at 1,964,382 to 1,965,539
_1887
Position (kb)
1962
1963
1964 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1961.341 kb on - strand, within Dshi_1883 at 1961.362 kb on + strand, within Dshi_1883 at 1961.414 kb on + strand at 1961.493 kb on + strand at 1961.668 kb on - strand, within Dshi_1884 at 1961.782 kb on + strand, within Dshi_1884 at 1962.149 kb on + strand at 1962.157 kb on - strand at 1963.387 kb on - strand at 1963.447 kb on - strand at 1963.482 kb on + strand, within Dshi_1886 at 1963.495 kb on - strand, within Dshi_1886 at 1963.911 kb on + strand, within Dshi_1886 at 1964.020 kb on + strand, within Dshi_1886 at 1964.028 kb on - strand, within Dshi_1886 at 1964.116 kb on - strand at 1964.118 kb on + strand at 1964.223 kb on + strand at 1964.312 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.02 mg/ml remove 1,961,341 - Dshi_1883 0.83 -3.4 1,961,362 + Dshi_1883 0.85 +2.0 1,961,414 + +2.4 1,961,493 + -1.6 1,961,668 - Dshi_1884 0.11 +0.4 1,961,782 + Dshi_1884 0.35 +0.4 1,962,149 + -1.1 1,962,157 - -2.2 1,963,387 - +0.9 1,963,447 - -1.9 1,963,482 + Dshi_1886 0.11 +2.0 1,963,495 - Dshi_1886 0.12 -1.2 1,963,911 + Dshi_1886 0.66 +2.7 1,964,020 + Dshi_1886 0.80 -0.6 1,964,028 - Dshi_1886 0.81 +0.4 1,964,116 - +1.2 1,964,118 + -0.2 1,964,223 + -0.9 1,964,312 + +0.1
Or see this region's nucleotide sequence