Experiment: m.b. A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1817 and Dshi_1818 are separated by 71 nucleotides Dshi_1818 and Dshi_1819 are separated by 100 nucleotides Dshi_1819 and Dshi_R0036 are separated by 158 nucleotides
Dshi_1817: Dshi_1817 - Pirin domain protein (RefSeq), at 1,895,702 to 1,896,640
_1817
Dshi_1818: Dshi_1818 - hypothetical protein (RefSeq), at 1,896,712 to 1,896,984
_1818
Dshi_1819: Dshi_1819 - transcriptional regulator, LuxR family (RefSeq), at 1,897,085 to 1,897,816
_1819
Dshi_R0036: Dshi_R0036 - tRNA-Val (RefSeq), at 1,897,975 to 1,898,050
_R0036
Position (kb)
1896
1897 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1895.844 kb on - strand, within Dshi_1817 at 1895.862 kb on - strand, within Dshi_1817 at 1895.876 kb on - strand, within Dshi_1817 at 1895.984 kb on + strand, within Dshi_1817 at 1896.063 kb on + strand, within Dshi_1817 at 1896.066 kb on - strand, within Dshi_1817 at 1896.081 kb on - strand, within Dshi_1817 at 1896.103 kb on + strand, within Dshi_1817 at 1896.218 kb on - strand, within Dshi_1817 at 1896.218 kb on - strand, within Dshi_1817 at 1896.301 kb on - strand, within Dshi_1817 at 1896.535 kb on + strand, within Dshi_1817 at 1896.644 kb on + strand at 1896.665 kb on + strand at 1896.913 kb on - strand, within Dshi_1818 at 1896.921 kb on - strand, within Dshi_1818 at 1896.960 kb on - strand at 1897.153 kb on - strand at 1897.236 kb on + strand, within Dshi_1819 at 1897.244 kb on - strand, within Dshi_1819 at 1897.270 kb on - strand, within Dshi_1819 at 1897.270 kb on - strand, within Dshi_1819 at 1897.320 kb on + strand, within Dshi_1819 at 1897.445 kb on + strand, within Dshi_1819 at 1897.466 kb on + strand, within Dshi_1819 at 1897.474 kb on - strand, within Dshi_1819 at 1897.596 kb on + strand, within Dshi_1819 at 1897.673 kb on + strand, within Dshi_1819 at 1897.699 kb on + strand, within Dshi_1819 at 1897.717 kb on - strand, within Dshi_1819 at 1897.728 kb on - strand, within Dshi_1819 at 1897.728 kb on - strand, within Dshi_1819 at 1897.752 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.02 mg/ml remove 1,895,844 - Dshi_1817 0.15 +1.3 1,895,862 - Dshi_1817 0.17 -2.0 1,895,876 - Dshi_1817 0.19 +2.3 1,895,984 + Dshi_1817 0.30 -1.2 1,896,063 + Dshi_1817 0.38 -2.7 1,896,066 - Dshi_1817 0.39 -0.1 1,896,081 - Dshi_1817 0.40 +2.7 1,896,103 + Dshi_1817 0.43 -0.5 1,896,218 - Dshi_1817 0.55 +3.1 1,896,218 - Dshi_1817 0.55 +0.9 1,896,301 - Dshi_1817 0.64 -0.7 1,896,535 + Dshi_1817 0.89 +0.3 1,896,644 + -2.1 1,896,665 + -1.0 1,896,913 - Dshi_1818 0.74 -1.2 1,896,921 - Dshi_1818 0.77 +0.1 1,896,960 - +1.9 1,897,153 - +0.3 1,897,236 + Dshi_1819 0.21 +0.3 1,897,244 - Dshi_1819 0.22 +1.9 1,897,270 - Dshi_1819 0.25 +0.3 1,897,270 - Dshi_1819 0.25 +0.3 1,897,320 + Dshi_1819 0.32 +1.9 1,897,445 + Dshi_1819 0.49 -1.2 1,897,466 + Dshi_1819 0.52 -1.5 1,897,474 - Dshi_1819 0.53 -0.7 1,897,596 + Dshi_1819 0.70 +0.3 1,897,673 + Dshi_1819 0.80 -2.0 1,897,699 + Dshi_1819 0.84 -0.9 1,897,717 - Dshi_1819 0.86 +1.3 1,897,728 - Dshi_1819 0.88 -0.7 1,897,728 - Dshi_1819 0.88 -2.7 1,897,752 + -2.5
Or see this region's nucleotide sequence