Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1722

Experiment: m.b. A22 0.02 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDshi_1720 and Dshi_1721 are separated by 111 nucleotidesDshi_1721 and Dshi_1722 are separated by 39 nucleotidesDshi_1722 and Dshi_R0031 are separated by 85 nucleotidesDshi_R0031 and Dshi_1723 are separated by 59 nucleotides Dshi_1720: Dshi_1720 - 3-oxoacyl-(acyl-carrier-protein) synthase III (RefSeq), at 1,787,238 to 1,788,212 _1720 Dshi_1721: Dshi_1721 - integration host factor, alpha subunit (RefSeq), at 1,788,324 to 1,788,629 _1721 Dshi_1722: Dshi_1722 - transcriptional regulator, MerR family (RefSeq), at 1,788,669 to 1,789,406 _1722 Dshi_R0031: Dshi_R0031 - tRNA-Pro (RefSeq), at 1,789,492 to 1,789,568 _R0031 Dshi_1723: Dshi_1723 - 2-deoxycytidine 5-triphosphate deaminase (RefSeq), at 1,789,628 to 1,790,722 _1723 Position (kb) 1788 1789 1790Strain fitness (log2 ratio) -3 -2 -1 0 1at 1788.778 kb on - strand, within Dshi_1722at 1789.177 kb on + strand, within Dshi_1722at 1789.704 kb on - strandat 1789.872 kb on - strand, within Dshi_1723at 1790.087 kb on + strand, within Dshi_1723

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.02 mg/ml
remove
1,788,778 - Dshi_1722 0.15 -1.7
1,789,177 + Dshi_1722 0.69 +0.3
1,789,704 - -0.7
1,789,872 - Dshi_1723 0.22 -3.1
1,790,087 + Dshi_1723 0.42 +0.3

Or see this region's nucleotide sequence