Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1708

Experiment: m.b. A22 0.02 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1706 and Dshi_1707 overlap by 1 nucleotidesDshi_1707 and Dshi_1708 are separated by 6 nucleotidesDshi_1708 and Dshi_1709 are separated by 380 nucleotides Dshi_1706: Dshi_1706 - methionine-R-sulfoxide reductase (RefSeq), at 1,773,917 to 1,774,366 _1706 Dshi_1707: Dshi_1707 - putative hemolysin (RefSeq), at 1,774,366 to 1,775,166 _1707 Dshi_1708: Dshi_1708 - NERD domain protein (RefSeq), at 1,775,173 to 1,775,952 _1708 Dshi_1709: Dshi_1709 - MscS Mechanosensitive ion channel (RefSeq), at 1,776,333 to 1,777,817 _1709 Position (kb) 1775 1776Strain fitness (log2 ratio) -3 -2 -1 0 1at 1774.265 kb on - strand, within Dshi_1706at 1774.390 kb on - strandat 1774.392 kb on + strandat 1774.671 kb on + strand, within Dshi_1707at 1774.763 kb on + strand, within Dshi_1707at 1774.782 kb on - strand, within Dshi_1707at 1775.646 kb on + strand, within Dshi_1708at 1775.760 kb on - strand, within Dshi_1708at 1775.776 kb on + strand, within Dshi_1708at 1776.317 kb on - strandat 1776.494 kb on + strand, within Dshi_1709at 1776.577 kb on + strand, within Dshi_1709at 1776.647 kb on - strand, within Dshi_1709at 1776.784 kb on + strand, within Dshi_1709at 1776.900 kb on - strand, within Dshi_1709

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.02 mg/ml
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1,774,265 - Dshi_1706 0.77 -0.7
1,774,390 - +0.3
1,774,392 + -3.4
1,774,671 + Dshi_1707 0.38 -2.1
1,774,763 + Dshi_1707 0.50 +0.3
1,774,782 - Dshi_1707 0.52 +0.3
1,775,646 + Dshi_1708 0.61 -0.3
1,775,760 - Dshi_1708 0.75 +0.3
1,775,776 + Dshi_1708 0.77 -0.7
1,776,317 - -1.7
1,776,494 + Dshi_1709 0.11 +1.3
1,776,577 + Dshi_1709 0.16 -1.8
1,776,647 - Dshi_1709 0.21 -3.2
1,776,784 + Dshi_1709 0.30 +0.3
1,776,900 - Dshi_1709 0.38 -1.1

Or see this region's nucleotide sequence